Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AL590240.4-201ENST00000616908 390 ntBASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 AC073349.3-201ENST00000617616 186 ntBASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
LIMD1Q9UGP4 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.56
LIMD1Q9UGP4 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.56
LIMD1Q9UGP4 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
LIMD1Q9UGP4 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
LIMD1Q9UGP4 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 AL359854.1-201ENST00000614203 1594 ntBASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 SRP72P2-201ENST00000344851 1979 ntBASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 RNA5SP191-201ENST00000362585 102 ntBASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 SNORA70.2-201ENST00000364506 135 ntBASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 SNORD32A-201ENST00000364805 84 ntBASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 Z98749.2-208ENST00000381646 500 ntBASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 Y_RNA.435-201ENST00000384095 112 ntBASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 RNU6-20P-201ENST00000384106 107 ntBASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 SNORD56.6-201ENST00000384569 71 ntBASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 SNORA66-201ENST00000384792 133 ntBASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 RNU6-159P-201ENST00000391080 106 ntBASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 PPIAP31-201ENST00000405422 495 ntBASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 HMGN2P30-201ENST00000423237 256 ntBASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 POLR2KP2-201ENST00000438155 177 ntBASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 AC097462.2-201ENST00000504623 481 ntBASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 BTF3L4P4-201ENST00000506381 449 ntBASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 RNU7-200P-201ENST00000516105 62 ntBASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 AC022559.1-201ENST00000520905 205 ntBASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 AC025884.1-201ENST00000556034 378 ntBASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 IGHVIII-44-202ENST00000636235 289 ntBASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 AC083843.2-201ENST00000568248 6253 ntBASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
LIMD1Q9UGP4 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 AL079305.1-201ENST00000623159 3008 ntBASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 RNU6-898P-201ENST00000365627 104 ntBASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 OR1L6-202ENST00000373684 1044 ntBASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 SNORD116-20-201ENST00000384529 92 ntBASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 RNA5SP332-201ENST00000391063 115 ntBASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 RNU6-1197P-201ENST00000391183 107 ntBASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 AL451074.5-201ENST00000415894 435 ntBASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 RPL18P10-201ENST00000425606 538 ntBASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 NDUFB4P8-201ENST00000435351 367 ntBASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 AC016632.1-201ENST00000503994 196 ntBASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 RNU6-1073P-201ENST00000517182 106 ntBASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 AC019159.1-201ENST00000605094 187 ntBASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 FTX_3.1-201ENST00000610451 147 ntBASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 AC006001.4-201ENST00000622243 395 ntBASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 OFD1P6Y-202ENST00000451061 2724 ntBASIC5.32□□□□□ -1.56
LIMD1Q9UGP4 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 AC090740.1-201ENST00000623193 2262 ntBASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 FTLP6-201ENST00000355274 422 ntBASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 SNORD115-8-201ENST00000363856 82 ntBASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 SNORD115-38-201ENST00000365037 82 ntBASIC5.31□□□□□ -1.56
LIMD1Q9UGP4 RNU6-1175P-201ENST00000365200 107 ntBASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms