Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 SSXP1-201ENST00000453640 473 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 RPL26P9-201ENST00000457466 433 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 AC013267.1-201ENST00000458227 267 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 RBM43P1-201ENST00000476891 1081 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 RPS15AP34-201ENST00000487776 387 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 MTND1P22-201ENST00000510572 951 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 AC106038.2-201ENST00000520706 568 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 AC103810.1-201ENST00000579873 453 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 MIR548AB-201ENST00000584917 84 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 AC005498.1-201ENST00000592125 465 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 AL355877.2-201ENST00000603670 358 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 AC098826.3-201ENST00000603823 466 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 AL161798.1-201ENST00000604630 131 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 AL031775.1-201ENST00000607014 887 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 AC008498.1-201ENST00000613012 531 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 AC034102.8-201ENST00000615146 484 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 AL603755.1-201ENST00000619504 163 ntBASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.67□□□□□ -1.98
VPS54Q9P1Q0 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 AL359693.1-201ENST00000614959 2407 ntBASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 UBE2L2-201ENST00000254302 429 ntBASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 RNU6-14P-201ENST00000384630 106 ntBASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 MIR888-201ENST00000401186 77 ntBASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 RPS4XP7-201ENST00000406274 780 ntBASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 AL356583.2-201ENST00000426536 280 ntBASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 AC093106.2-201ENST00000428212 385 ntBASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 MTND1P28-201ENST00000435623 950 ntBASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 COX6CP12-201ENST00000446748 202 ntBASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 AC027673.1-201ENST00000456245 405 ntBASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 AC098862.1-201ENST00000504991 413 ntBASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 RNA5SP281-201ENST00000516504 135 ntBASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 AC025281.1-201ENST00000567026 265 ntBASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 AC103710.2-201ENST00000609912 942 ntBASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
VPS54Q9P1Q0 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.65□□□□□ -1.98
VPS54Q9P1Q0 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.65□□□□□ -1.98
VPS54Q9P1Q0 Z82195.2-201ENST00000612348 18351 ntBASIC2.65□□□□□ -1.98
VPS54Q9P1Q0 FCF1P10-201ENST00000407590 479 ntBASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 RPL17P12-201ENST00000413391 526 ntBASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 AL358075.3-201ENST00000426289 226 ntBASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 NEFMP1-201ENST00000443423 1006 ntBASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 USP9YP12-201ENST00000450481 570 ntBASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 RPL23AP70-201ENST00000483361 460 ntBASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 MRPS36P2-201ENST00000512569 299 ntBASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 SNORA31.3-201ENST00000516029 96 ntBASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 RNA5SP165-201ENST00000517142 115 ntBASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 MIR5007-201ENST00000583098 95 ntBASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 AC012065.4-201ENST00000602445 679 ntBASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 AC007363.1-201ENST00000604736 620 ntBASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 AC007938.3-201ENST00000604965 623 ntBASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 AC092354.1-201ENST00000606057 376 ntBASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 AC009878.1-201ENST00000621819 340 ntBASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 CR848007.1-201ENST00000442354 1699 ntBASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.65□□□□□ -1.99
VPS54Q9P1Q0 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 RNU6-511P-201ENST00000363496 107 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 RNU6-288P-201ENST00000363690 104 ntBASIC2.64□□□□□ -1.99
VPS54Q9P1Q0 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms