Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RNU6-50P-201ENST00000362356 103 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 SNORD9-201ENST00000362566 104 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 Y_RNA.245-201ENST00000364493 95 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
TDP1Q9NUW8 MIR493-201ENST00000385254 89 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 MIR301A-201ENST00000385261 86 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC3.82□□□□□ -1.8
TDP1Q9NUW8 AP000907.1-201ENST00000428428 510 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 CYCSP4-201ENST00000429682 331 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 AC011742.1-201ENST00000431448 434 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 AL159987.2-201ENST00000432754 307 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.82□□□□□ -1.8
TDP1Q9NUW8 PIGFP3-201ENST00000441918 722 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 AC009237.8-201ENST00000445492 379 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.82□□□□□ -1.8
TDP1Q9NUW8 FABP5P15-201ENST00000453566 214 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC3.82□□□□□ -1.8
TDP1Q9NUW8 AC117503.1-201ENST00000472241 394 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 KC877373.1-201ENST00000479066 408 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 MTCO1P29-201ENST00000496868 288 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.82□□□□□ -1.8
TDP1Q9NUW8 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC3.82□□□□□ -1.8
TDP1Q9NUW8 AC074250.1-201ENST00000511117 192 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 RN7SKP13-201ENST00000515933 244 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 Y_RNA.682-201ENST00000516457 100 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 RNU6-1069P-201ENST00000516612 133 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 RNA5SP309-201ENST00000516670 106 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 RNA5SP468-201ENST00000516782 93 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.82□□□□□ -1.8
TDP1Q9NUW8 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.82□□□□□ -1.8
TDP1Q9NUW8 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC3.82□□□□□ -1.8
TDP1Q9NUW8 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.82□□□□□ -1.8
TDP1Q9NUW8 MIR5692C1-201ENST00000585309 91 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 AL670379.10-201ENST00000604330 253 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 AL161756.2-201ENST00000604597 246 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 AL670379.9-201ENST00000605428 253 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
TDP1Q9NUW8 AC006023.2-201ENST00000609916 167 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 AC096577.2-201ENST00000611455 153 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC3.82□□□□□ -1.8
TDP1Q9NUW8 AL442067.2-201ENST00000614033 363 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 FAM157A-202ENST00000615155 405 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 MIR7975-201ENST00000619350 68 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC3.82□□□□□ -1.8
TDP1Q9NUW8 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.82□□□□□ -1.8
TDP1Q9NUW8 AP000553.6-201ENST00000641242 118 ntBASIC3.82□□□□□ -1.8
TDP1Q9NUW8 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
TDP1Q9NUW8 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
TDP1Q9NUW8 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
TDP1Q9NUW8 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.81□□□□□ -1.8
TDP1Q9NUW8 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.81□□□□□ -1.8
TDP1Q9NUW8 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
TDP1Q9NUW8 PTMAP5-201ENST00000393073 333 ntBASIC3.81□□□□□ -1.8
TDP1Q9NUW8 MIR450B-201ENST00000401182 78 ntBASIC3.81□□□□□ -1.8
TDP1Q9NUW8 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC3.81□□□□□ -1.8
TDP1Q9NUW8 RPL21P109-201ENST00000422213 475 ntBASIC3.81□□□□□ -1.8
TDP1Q9NUW8 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.81□□□□□ -1.8
TDP1Q9NUW8 AC087650.1-201ENST00000431445 468 ntBASIC3.81□□□□□ -1.8
TDP1Q9NUW8 GPM6BP2-201ENST00000432046 144 ntBASIC3.81□□□□□ -1.8
TDP1Q9NUW8 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.81□□□□□ -1.8
TDP1Q9NUW8 GPM6BP1-201ENST00000446387 144 ntBASIC3.81□□□□□ -1.8
TDP1Q9NUW8 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.81□□□□□ -1.8
TDP1Q9NUW8 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.81□□□□□ -1.8
TDP1Q9NUW8 MTND3P25-201ENST00000509243 135 ntBASIC3.81□□□□□ -1.8
TDP1Q9NUW8 LIAS-206ENST00000513731 826 ntTSL 5 BASIC3.81□□□□□ -1.8
TDP1Q9NUW8 RNA5SP290-201ENST00000517133 127 ntBASIC3.81□□□□□ -1.8
TDP1Q9NUW8 AP003122.3-201ENST00000526316 255 ntBASIC3.81□□□□□ -1.8
TDP1Q9NUW8 AC084851.1-201ENST00000529105 249 ntBASIC3.81□□□□□ -1.8
TDP1Q9NUW8 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC3.81□□□□□ -1.8
TDP1Q9NUW8 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.81□□□□□ -1.8
TDP1Q9NUW8 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC3.81□□□□□ -1.8
TDP1Q9NUW8 AL157871.3-201ENST00000557231 293 ntBASIC3.81□□□□□ -1.8
TDP1Q9NUW8 MIR1273C-201ENST00000578669 77 ntBASIC3.81□□□□□ -1.8
TDP1Q9NUW8 AL050343.2-201ENST00000607338 280 ntBASIC3.81□□□□□ -1.8
TDP1Q9NUW8 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
TDP1Q9NUW8 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
TDP1Q9NUW8 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
TDP1Q9NUW8 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
TDP1Q9NUW8 AC007823.1-201ENST00000569932 1566 ntBASIC3.8□□□□□ -1.8
TDP1Q9NUW8 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
TDP1Q9NUW8 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC3.8□□□□□ -1.8
TDP1Q9NUW8 AC007785.2-201ENST00000598627 1916 ntBASIC3.8□□□□□ -1.8
TDP1Q9NUW8 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
TDP1Q9NUW8 Y_RNA.339-201ENST00000365325 102 ntBASIC3.8□□□□□ -1.8
TDP1Q9NUW8 DEFB109C-201ENST00000382575 264 ntBASIC3.8□□□□□ -1.8
TDP1Q9NUW8 DEFB109B-201ENST00000382656 264 ntBASIC3.8□□□□□ -1.8
TDP1Q9NUW8 Y_RNA.460-201ENST00000384255 102 ntBASIC3.8□□□□□ -1.8
TDP1Q9NUW8 HLFP1-201ENST00000402375 499 ntBASIC3.8□□□□□ -1.8
TDP1Q9NUW8 U3.42-201ENST00000408746 214 ntBASIC3.8□□□□□ -1.8
TDP1Q9NUW8 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.8□□□□□ -1.8
TDP1Q9NUW8 VN1R36P-201ENST00000414936 291 ntBASIC3.8□□□□□ -1.8
TDP1Q9NUW8 RPS3AP12-201ENST00000443616 753 ntBASIC3.8□□□□□ -1.8
TDP1Q9NUW8 RPS26P15-201ENST00000488067 348 ntBASIC3.8□□□□□ -1.8
TDP1Q9NUW8 AC022493.1-201ENST00000492984 337 ntBASIC3.8□□□□□ -1.8
TDP1Q9NUW8 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.8□□□□□ -1.8
TDP1Q9NUW8 RNU6-566P-201ENST00000516790 107 ntBASIC3.8□□□□□ -1.8
TDP1Q9NUW8 RNA5SP291-201ENST00000517222 105 ntBASIC3.8□□□□□ -1.8
TDP1Q9NUW8 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC3.8□□□□□ -1.8
TDP1Q9NUW8 CYCSP27-201ENST00000527643 293 ntBASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 176.6 ms