Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AL121769.1-201ENST00000469473 401 ntBASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 AC139453.3-201ENST00000493276 369 ntBASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 AC109927.2-201ENST00000506416 303 ntBASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 RNU6-914P-201ENST00000516749 109 ntBASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 AC025881.1-201ENST00000518851 512 ntBASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 MIR5194-201ENST00000582634 120 ntBASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 MIR4658-201ENST00000584344 65 ntBASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 AP000860.1-201ENST00000605250 559 ntBASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 AC096772.1-201ENST00000609146 564 ntBASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 AC005332.10-201ENST00000612725 619 ntBASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 PISRT1-201ENST00000626175 531 ntBASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 RNY4P16-201ENST00000364768 94 ntBASIC3.64□□□□□ -1.83
CHMP4AQ9BY43 RNU6-946P-201ENST00000383878 107 ntBASIC3.64□□□□□ -1.83
CHMP4AQ9BY43 SNORA40C-201ENST00000391285 128 ntBASIC3.64□□□□□ -1.83
CHMP4AQ9BY43 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.64□□□□□ -1.83
CHMP4AQ9BY43 AC010099.3-201ENST00000423896 409 ntBASIC3.64□□□□□ -1.83
CHMP4AQ9BY43 AC119618.1-201ENST00000434191 222 ntBASIC3.64□□□□□ -1.83
CHMP4AQ9BY43 AC105272.1-201ENST00000438604 198 ntBASIC3.64□□□□□ -1.83
CHMP4AQ9BY43 CYP2C59P-201ENST00000457790 269 ntBASIC3.64□□□□□ -1.83
CHMP4AQ9BY43 AC107934.1-201ENST00000522215 217 ntBASIC3.64□□□□□ -1.83
CHMP4AQ9BY43 EEF1A1P37-201ENST00000522748 715 ntBASIC3.64□□□□□ -1.83
CHMP4AQ9BY43 OR5AQ1P-201ENST00000527596 927 ntBASIC3.64□□□□□ -1.83
CHMP4AQ9BY43 ZNF519P3-201ENST00000557158 1032 ntBASIC3.64□□□□□ -1.83
CHMP4AQ9BY43 AC234778.2-201ENST00000566241 354 ntBASIC3.64□□□□□ -1.83
CHMP4AQ9BY43 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.64□□□□□ -1.83
CHMP4AQ9BY43 AC091953.2-201ENST00000623979 160 ntBASIC3.64□□□□□ -1.83
CHMP4AQ9BY43 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.64□□□□□ -1.83
CHMP4AQ9BY43 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 OR5J1P-201ENST00000313544 939 ntBASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 Y_RNA.608-201ENST00000410647 95 ntBASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 AC244505.4-201ENST00000434905 287 ntBASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 AL512286.1-201ENST00000439244 400 ntBASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 SSXP5-201ENST00000443473 287 ntBASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 AL139824.2-201ENST00000458731 1095 ntBASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 AP000852.1-201ENST00000472460 573 ntBASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 AC116655.1-201ENST00000508324 901 ntBASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 ACA59.2-201ENST00000517061 156 ntBASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 SNORA31.19-201ENST00000517079 126 ntBASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 AC009902.1-201ENST00000519351 183 ntBASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 AC027176.1-201ENST00000560204 514 ntBASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 CYCSP39-201ENST00000565821 309 ntBASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 NRBF2P1-201ENST00000587407 859 ntBASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 AC004223.4-201ENST00000612426 332 ntBASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 AC138627.2-201ENST00000624202 601 ntBASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 AC006386.2-201ENST00000624491 75 ntBASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 AC012005.1-201ENST00000624575 75 ntBASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 SCARNA15.3-201ENST00000626315 122 ntBASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 SCARNA4.1-201ENST00000628597 123 ntBASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 ZNF271P-202ENST00000465539 1970 ntBASIC3.63□□□□□ -1.83
CHMP4AQ9BY43 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.62□□□□□ -1.83
CHMP4AQ9BY43 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.62□□□□□ -1.83
CHMP4AQ9BY43 RNU5F-6P-201ENST00000362979 116 ntBASIC3.62□□□□□ -1.83
CHMP4AQ9BY43 MIR218-1-201ENST00000384999 110 ntBASIC3.62□□□□□ -1.83
CHMP4AQ9BY43 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC3.62□□□□□ -1.83
CHMP4AQ9BY43 RPS15AP12-201ENST00000419498 388 ntBASIC3.62□□□□□ -1.83
CHMP4AQ9BY43 Z99497.1-201ENST00000421282 135 ntBASIC3.62□□□□□ -1.83
CHMP4AQ9BY43 Z98742.2-201ENST00000431564 187 ntBASIC3.62□□□□□ -1.83
CHMP4AQ9BY43 RPS15AP9-201ENST00000439856 381 ntBASIC3.62□□□□□ -1.83
CHMP4AQ9BY43 AP001324.2-201ENST00000461163 319 ntBASIC3.62□□□□□ -1.83
CHMP4AQ9BY43 AC007182.2-201ENST00000489251 402 ntBASIC3.62□□□□□ -1.83
CHMP4AQ9BY43 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC3.62□□□□□ -1.83
CHMP4AQ9BY43 RNU5B-3P-201ENST00000516601 115 ntBASIC3.62□□□□□ -1.83
CHMP4AQ9BY43 AC025755.1-201ENST00000521306 278 ntBASIC3.62□□□□□ -1.83
CHMP4AQ9BY43 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CHMP4AQ9BY43 MIR3605-201ENST00000583214 100 ntBASIC3.62□□□□□ -1.83
CHMP4AQ9BY43 AL645944.1-201ENST00000603857 493 ntBASIC3.62□□□□□ -1.83
CHMP4AQ9BY43 AC087045.1-201ENST00000605856 382 ntBASIC3.62□□□□□ -1.83
CHMP4AQ9BY43 AP002360.4-201ENST00000606980 481 ntBASIC3.62□□□□□ -1.83
CHMP4AQ9BY43 AC245884.12-201ENST00000615364 59 ntBASIC3.62□□□□□ -1.83
CHMP4AQ9BY43 AC092140.2-201ENST00000618027 521 ntBASIC3.62□□□□□ -1.83
CHMP4AQ9BY43 AC007671.2-201ENST00000637344 619 ntBASIC3.62□□□□□ -1.83
CHMP4AQ9BY43 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CHMP4AQ9BY43 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CHMP4AQ9BY43 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CHMP4AQ9BY43 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
CHMP4AQ9BY43 RNU6-1025P-201ENST00000410629 104 ntBASIC3.61□□□□□ -1.83
CHMP4AQ9BY43 CYCSP48-201ENST00000417124 323 ntBASIC3.61□□□□□ -1.83
CHMP4AQ9BY43 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms