Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
NKX3-1Q99801 RNU6-1029P-201ENST00000384109 107 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 RNU6-190P-201ENST00000384154 102 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 RNU6-140P-201ENST00000384566 108 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 Y_RNA.534-201ENST00000384599 112 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 RNU6-817P-201ENST00000391083 104 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 SAR1AP2-201ENST00000392696 594 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 RN7SKP123-201ENST00000410732 291 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 RNA5SP120-201ENST00000410900 112 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 OFD1P1Y-201ENST00000411756 1225 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 OR51A5P-201ENST00000415429 942 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC2.71□□□□□ -1.98
NKX3-1Q99801 AL109913.1-201ENST00000421173 514 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
NKX3-1Q99801 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.71□□□□□ -1.98
NKX3-1Q99801 MTCO3P30-201ENST00000426425 670 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 DPPA2P1-201ENST00000428060 556 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 ELOCP14-201ENST00000428070 331 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.71□□□□□ -1.98
NKX3-1Q99801 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC2.71□□□□□ -1.98
NKX3-1Q99801 RPL36AP6-201ENST00000435770 321 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 AC006028.1-201ENST00000438379 402 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 ELOCP7-201ENST00000439968 331 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC2.71□□□□□ -1.98
NKX3-1Q99801 RPL23AP20-201ENST00000447965 421 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 AL590664.1-201ENST00000448065 339 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC2.71□□□□□ -1.98
NKX3-1Q99801 FDX1P2-201ENST00000450769 375 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 AL118520.1-201ENST00000450770 291 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 UQCRHP3-201ENST00000451503 251 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 FABP5P15-201ENST00000453566 214 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 RPL21P41-201ENST00000459863 264 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.71□□□□□ -1.98
NKX3-1Q99801 RPL30P14-201ENST00000482744 348 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 AC233702.1-201ENST00000482905 502 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 RNU6-1282P-201ENST00000516735 96 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 RNU6-914P-201ENST00000516749 109 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 RNU6-677P-201ENST00000516914 101 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 AC104383.1-201ENST00000530297 370 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC2.71□□□□□ -1.98
NKX3-1Q99801 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC2.71□□□□□ -1.98
NKX3-1Q99801 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC2.71□□□□□ -1.98
NKX3-1Q99801 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC2.71□□□□□ -1.98
NKX3-1Q99801 AL157817.1-201ENST00000614264 790 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 CR381653.2-201ENST00000624041 768 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 Z99571.1-201ENST00000636677 394 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.71□□□□□ -1.98
NKX3-1Q99801 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
NKX3-1Q99801 GABRG2-229ENST00000641017 3628 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC2.7□□□□□ -1.98
NKX3-1Q99801 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
NKX3-1Q99801 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.7□□□□□ -1.98
NKX3-1Q99801 CKAP2P1-201ENST00000555477 2049 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 AL161431.1-201ENST00000618966 4205 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
NKX3-1Q99801 Y_RNA.6-201ENST00000362350 114 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 RNU6-1090P-201ENST00000364065 94 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 SNORA1.3-201ENST00000384676 136 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 SNORD67-201ENST00000390833 111 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 RNA5SP252-201ENST00000391131 119 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 CISD1P1-201ENST00000393907 327 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 AL590002.1-201ENST00000406554 418 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 AC099548.1-201ENST00000421443 426 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 MTCYBP8-201ENST00000422855 651 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 RPL7P54-201ENST00000438336 674 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 RPS12P18-201ENST00000442381 270 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC2.7□□□□□ -1.98
NKX3-1Q99801 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC2.7□□□□□ -1.98
NKX3-1Q99801 CACYBPP2-201ENST00000453625 678 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 DCLRE1CP1-201ENST00000454630 470 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 AC027673.1-201ENST00000456245 405 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 RNU6-420P-201ENST00000458780 107 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 RNU6-953P-201ENST00000459154 107 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.7□□□□□ -1.98
NKX3-1Q99801 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC2.7□□□□□ -1.98
NKX3-1Q99801 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.7□□□□□ -1.98
NKX3-1Q99801 AC009901.1-201ENST00000506703 541 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 AC104806.1-201ENST00000508720 308 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 SNORA31.1-201ENST00000515993 133 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 SNORA31.5-201ENST00000516190 133 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 RNU6-711P-201ENST00000517255 106 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.7□□□□□ -1.98
NKX3-1Q99801 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
NKX3-1Q99801 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
NKX3-1Q99801 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.7□□□□□ -1.98
NKX3-1Q99801 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
NKX3-1Q99801 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC2.7□□□□□ -1.98
NKX3-1Q99801 AMZ2P1-203ENST00000565833 850 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 AL133393.1-201ENST00000603277 287 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 AC004805.2-201ENST00000605382 482 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 AP001330.5-201ENST00000607176 411 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 AC126118.1-201ENST00000607744 628 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC2.7□□□□□ -1.98
NKX3-1Q99801 AL442067.2-201ENST00000614033 363 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 AC073534.2-201ENST00000620377 381 ntBASIC2.7□□□□□ -1.98
NKX3-1Q99801 ATM-228ENST00000639240 498 ntTSL 5 BASIC2.7□□□□□ -1.98
NKX3-1Q99801 ATM-230ENST00000640388 578 ntTSL 5 BASIC2.7□□□□□ -1.98
NKX3-1Q99801 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
NKX3-1Q99801 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms