Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SNORA8-201ENST00000384574 139 ntBASIC0.23□□□□□ -2.37
VPS13AQ96RL7 RPS4XP3-201ENST00000398541 413 ntBASIC0.23□□□□□ -2.37
VPS13AQ96RL7 MIR938-201ENST00000401216 83 ntBASIC0.23□□□□□ -2.37
VPS13AQ96RL7 AL135752.1-201ENST00000479477 471 ntBASIC0.23□□□□□ -2.37
VPS13AQ96RL7 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC0.23□□□□□ -2.37
VPS13AQ96RL7 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC0.23□□□□□ -2.37
VPS13AQ96RL7 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC0.23□□□□□ -2.37
VPS13AQ96RL7 AP003476.1-201ENST00000623984 516 ntBASIC0.23□□□□□ -2.37
VPS13AQ96RL7 MIR198-201ENST00000637333 62 ntBASIC0.23□□□□□ -2.37
VPS13AQ96RL7 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC0.23□□□□□ -2.37
VPS13AQ96RL7 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC0.23□□□□□ -2.37
VPS13AQ96RL7 CCT4P2-201ENST00000233836 1548 ntBASIC0.23□□□□□ -2.37
VPS13AQ96RL7 RNU6-1126P-201ENST00000384002 107 ntBASIC0.22□□□□□ -2.37
VPS13AQ96RL7 HMGB1P17-201ENST00000403495 628 ntBASIC0.22□□□□□ -2.37
VPS13AQ96RL7 AL035410.1-201ENST00000427409 427 ntBASIC0.22□□□□□ -2.37
VPS13AQ96RL7 RPL7P29-201ENST00000437151 728 ntBASIC0.22□□□□□ -2.37
VPS13AQ96RL7 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC0.22□□□□□ -2.37
VPS13AQ96RL7 AC097499.1-201ENST00000444277 208 ntBASIC0.22□□□□□ -2.37
VPS13AQ96RL7 AC079448.1-201ENST00000449377 373 ntBASIC0.22□□□□□ -2.37
VPS13AQ96RL7 AC087884.1-201ENST00000469738 328 ntBASIC0.22□□□□□ -2.37
VPS13AQ96RL7 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.22□□□□□ -2.37
VPS13AQ96RL7 MIR4645-201ENST00000583158 77 ntBASIC0.22□□□□□ -2.37
VPS13AQ96RL7 AC087821.2-201ENST00000637086 450 ntBASIC0.22□□□□□ -2.37
VPS13AQ96RL7 MIR100-201ENST00000385259 80 ntBASIC0.22□□□□□ -2.37
VPS13AQ96RL7 AC096533.1-201ENST00000411645 353 ntBASIC0.22□□□□□ -2.37
VPS13AQ96RL7 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC0.22□□□□□ -2.37
VPS13AQ96RL7 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC0.22□□□□□ -2.37
VPS13AQ96RL7 LDHBP3-201ENST00000514909 822 ntBASIC0.22□□□□□ -2.37
VPS13AQ96RL7 AC005332.10-201ENST00000612725 619 ntBASIC0.22□□□□□ -2.37
VPS13AQ96RL7 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC0.22□□□□□ -2.37
VPS13AQ96RL7 RPS3AP37-201ENST00000419176 745 ntBASIC0.22□□□□□ -2.37
VPS13AQ96RL7 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC0.22□□□□□ -2.37
VPS13AQ96RL7 UBL5P1-201ENST00000507979 193 ntBASIC0.22□□□□□ -2.37
VPS13AQ96RL7 AC093770.1-201ENST00000511559 571 ntBASIC0.22□□□□□ -2.37
VPS13AQ96RL7 AC090666.1-201ENST00000578241 445 ntBASIC0.22□□□□□ -2.37
VPS13AQ96RL7 AC243960.4-201ENST00000600532 288 ntBASIC0.22□□□□□ -2.37
VPS13AQ96RL7 AP001350.1-201ENST00000601906 1524 ntBASIC0.21□□□□□ -2.38
VPS13AQ96RL7 MIR126-201ENST00000362291 85 ntBASIC0.21□□□□□ -2.38
VPS13AQ96RL7 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC0.21□□□□□ -2.38
VPS13AQ96RL7 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC0.21□□□□□ -2.38
VPS13AQ96RL7 AP006587.4-201ENST00000526053 529 ntBASIC0.21□□□□□ -2.38
VPS13AQ96RL7 AC090115.3-201ENST00000553218 849 ntBASIC0.21□□□□□ -2.38
VPS13AQ96RL7 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC0.21□□□□□ -2.38
VPS13AQ96RL7 BNIP3P16-201ENST00000589779 534 ntBASIC0.21□□□□□ -2.38
VPS13AQ96RL7 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC0.21□□□□□ -2.38
VPS13AQ96RL7 MIR124-3-201ENST00000384866 87 ntBASIC0.21□□□□□ -2.38
VPS13AQ96RL7 AL117342.1-201ENST00000404861 406 ntBASIC0.21□□□□□ -2.38
VPS13AQ96RL7 AC119618.1-201ENST00000434191 222 ntBASIC0.21□□□□□ -2.38
VPS13AQ96RL7 CLIC4P1-201ENST00000453177 535 ntBASIC0.21□□□□□ -2.38
VPS13AQ96RL7 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC0.21□□□□□ -2.38
VPS13AQ96RL7 RNU6-711P-201ENST00000517255 106 ntBASIC0.21□□□□□ -2.38
VPS13AQ96RL7 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC0.21□□□□□ -2.38
VPS13AQ96RL7 AL627230.6-201ENST00000611129 280 ntBASIC0.21□□□□□ -2.38
VPS13AQ96RL7 RNU6-1184P-201ENST00000384588 108 ntBASIC0.2□□□□□ -2.38
VPS13AQ96RL7 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC0.2□□□□□ -2.38
VPS13AQ96RL7 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC0.2□□□□□ -2.38
VPS13AQ96RL7 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.2□□□□□ -2.38
VPS13AQ96RL7 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC0.2□□□□□ -2.38
VPS13AQ96RL7 RSL24D1P11-201ENST00000591045 491 ntBASIC0.2□□□□□ -2.38
VPS13AQ96RL7 MIR627-201ENST00000384979 97 ntBASIC0.2□□□□□ -2.38
VPS13AQ96RL7 BTF3L4P2-201ENST00000392798 346 ntBASIC0.2□□□□□ -2.38
VPS13AQ96RL7 RPEP5-201ENST00000441137 268 ntBASIC0.2□□□□□ -2.38
VPS13AQ96RL7 AC022202.1-201ENST00000613515 211 ntBASIC0.2□□□□□ -2.38
VPS13AQ96RL7 AC145207.9-201ENST00000623802 325 ntBASIC0.2□□□□□ -2.38
VPS13AQ96RL7 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC0.2□□□□□ -2.38
VPS13AQ96RL7 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC0.2□□□□□ -2.38
VPS13AQ96RL7 RNU6-833P-201ENST00000363486 107 ntBASIC0.2□□□□□ -2.38
VPS13AQ96RL7 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC0.2□□□□□ -2.38
VPS13AQ96RL7 AL512604.1-201ENST00000404812 257 ntBASIC0.2□□□□□ -2.38
VPS13AQ96RL7 NAP1L1P1-201ENST00000524793 1063 ntBASIC0.2□□□□□ -2.38
VPS13AQ96RL7 OR5AL2P-201ENST00000532185 920 ntBASIC0.2□□□□□ -2.38
VPS13AQ96RL7 RPL23AP3-201ENST00000453844 468 ntBASIC0.19□□□□□ -2.38
VPS13AQ96RL7 RNA5SP57-201ENST00000459463 123 ntBASIC0.19□□□□□ -2.38
VPS13AQ96RL7 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC0.19□□□□□ -2.38
VPS13AQ96RL7 AC133963.2-201ENST00000513686 578 ntBASIC0.19□□□□□ -2.38
VPS13AQ96RL7 ERHP1-201ENST00000523006 310 ntBASIC0.19□□□□□ -2.38
VPS13AQ96RL7 MIR548AX-201ENST00000580117 73 ntBASIC0.19□□□□□ -2.38
VPS13AQ96RL7 AC016925.2-201ENST00000605108 242 ntBASIC0.19□□□□□ -2.38
VPS13AQ96RL7 AC023141.4-201ENST00000412031 328 ntBASIC0.19□□□□□ -2.38
VPS13AQ96RL7 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC0.19□□□□□ -2.38
VPS13AQ96RL7 AC141557.1-201ENST00000540982 400 ntBASIC0.19□□□□□ -2.38
VPS13AQ96RL7 AC068714.1-201ENST00000559623 800 ntBASIC0.19□□□□□ -2.38
VPS13AQ96RL7 AC002545.1-201ENST00000592511 181 ntBASIC0.19□□□□□ -2.38
VPS13AQ96RL7 AL355472.4-201ENST00000610233 626 ntBASIC0.19□□□□□ -2.38
VPS13AQ96RL7 DLEU1_2.1-201ENST00000617920 342 ntBASIC0.18□□□□□ -2.38
VPS13AQ96RL7 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC0.18□□□□□ -2.38
VPS13AQ96RL7 RPL23AP54-201ENST00000495129 419 ntBASIC0.18□□□□□ -2.38
VPS13AQ96RL7 AC018618.2-201ENST00000604770 446 ntBASIC0.18□□□□□ -2.38
VPS13AQ96RL7 SNORA25.8-201ENST00000364831 128 ntBASIC0.18□□□□□ -2.38
VPS13AQ96RL7 RNA5SP118-201ENST00000410385 109 ntBASIC0.18□□□□□ -2.38
VPS13AQ96RL7 RPL37P21-201ENST00000435890 276 ntBASIC0.18□□□□□ -2.38
VPS13AQ96RL7 AC138853.1-201ENST00000503549 823 ntBASIC0.18□□□□□ -2.38
VPS13AQ96RL7 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC0.18□□□□□ -2.38
VPS13AQ96RL7 AP003717.3-201ENST00000544832 1180 ntBASIC0.18□□□□□ -2.38
VPS13AQ96RL7 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.18□□□□□ -2.38
VPS13AQ96RL7 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.17□□□□□ -2.38
VPS13AQ96RL7 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC0.17□□□□□ -2.38
VPS13AQ96RL7 FAM60CP-201ENST00000591086 664 ntBASIC0.17□□□□□ -2.38
VPS13AQ96RL7 MIR934-201ENST00000401241 83 ntBASIC0.17□□□□□ -2.38
VPS13AQ96RL7 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC0.17□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms