Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 RPL21P28-201ENST00000401418 483 ntBASIC3.24□□□□□ -1.89
SKA1Q96BD8 AL592114.1-201ENST00000403842 483 ntBASIC3.24□□□□□ -1.89
SKA1Q96BD8 RNA5SP229-201ENST00000410809 99 ntBASIC3.24□□□□□ -1.89
SKA1Q96BD8 RNA5SP344-201ENST00000411081 104 ntBASIC3.24□□□□□ -1.89
SKA1Q96BD8 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC3.24□□□□□ -1.89
SKA1Q96BD8 AC244505.4-201ENST00000434905 287 ntBASIC3.24□□□□□ -1.89
SKA1Q96BD8 ATP5C1P1-201ENST00000441945 895 ntBASIC3.24□□□□□ -1.89
SKA1Q96BD8 SSXP5-201ENST00000443473 287 ntBASIC3.24□□□□□ -1.89
SKA1Q96BD8 AL078601.1-201ENST00000444542 271 ntBASIC3.24□□□□□ -1.89
SKA1Q96BD8 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
SKA1Q96BD8 MTND1P27-201ENST00000451117 902 ntBASIC3.24□□□□□ -1.89
SKA1Q96BD8 RN7SL863P-201ENST00000462370 296 ntBASIC3.24□□□□□ -1.89
SKA1Q96BD8 RPL21P39-201ENST00000463605 483 ntBASIC3.24□□□□□ -1.89
SKA1Q96BD8 AC107626.1-201ENST00000471084 183 ntBASIC3.24□□□□□ -1.89
SKA1Q96BD8 RPL21P93-201ENST00000480465 489 ntBASIC3.24□□□□□ -1.89
SKA1Q96BD8 AL049873.1-201ENST00000480540 376 ntBASIC3.24□□□□□ -1.89
SKA1Q96BD8 AC087190.1-201ENST00000484462 480 ntBASIC3.24□□□□□ -1.89
SKA1Q96BD8 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC3.24□□□□□ -1.89
SKA1Q96BD8 AC093591.1-201ENST00000491435 481 ntBASIC3.24□□□□□ -1.89
SKA1Q96BD8 RPL21P16-201ENST00000495531 483 ntBASIC3.24□□□□□ -1.89
SKA1Q96BD8 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC3.24□□□□□ -1.89
SKA1Q96BD8 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC3.24□□□□□ -1.89
SKA1Q96BD8 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.24□□□□□ -1.89
SKA1Q96BD8 MIR3616-201ENST00000584070 92 ntBASIC3.24□□□□□ -1.89
SKA1Q96BD8 AC090578.1-201ENST00000604955 591 ntBASIC3.24□□□□□ -1.89
SKA1Q96BD8 uc_338.1-201ENST00000612113 180 ntBASIC3.24□□□□□ -1.89
SKA1Q96BD8 AL589743.7-201ENST00000612637 233 ntBASIC3.24□□□□□ -1.89
SKA1Q96BD8 AC024940.5-201ENST00000622889 474 ntBASIC3.24□□□□□ -1.89
SKA1Q96BD8 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.24□□□□□ -1.89
SKA1Q96BD8 MTND5P19-201ENST00000424872 1794 ntBASIC3.24□□□□□ -1.89
SKA1Q96BD8 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
SKA1Q96BD8 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
SKA1Q96BD8 AC103710.2-202ENST00000641454 2853 ntBASIC3.24□□□□□ -1.89
SKA1Q96BD8 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.24□□□□□ -1.89
SKA1Q96BD8 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.24□□□□□ -1.89
SKA1Q96BD8 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
SKA1Q96BD8 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
SKA1Q96BD8 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
SKA1Q96BD8 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.23□□□□□ -1.89
SKA1Q96BD8 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
SKA1Q96BD8 RNU1-70P-201ENST00000362618 164 ntBASIC3.23□□□□□ -1.89
SKA1Q96BD8 RNU6-461P-201ENST00000364195 107 ntBASIC3.23□□□□□ -1.89
SKA1Q96BD8 RNU6-169P-201ENST00000365336 107 ntBASIC3.23□□□□□ -1.89
SKA1Q96BD8 RNA5SP492-201ENST00000411330 114 ntBASIC3.23□□□□□ -1.89
SKA1Q96BD8 AC114491.1-201ENST00000416095 246 ntBASIC3.23□□□□□ -1.89
SKA1Q96BD8 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC3.23□□□□□ -1.89
SKA1Q96BD8 AL022238.1-201ENST00000442557 355 ntBASIC3.23□□□□□ -1.89
SKA1Q96BD8 AC079781.2-201ENST00000446424 169 ntBASIC3.23□□□□□ -1.89
SKA1Q96BD8 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3.23□□□□□ -1.89
SKA1Q96BD8 AC009961.3-201ENST00000449832 765 ntBASIC3.23□□□□□ -1.89
SKA1Q96BD8 UQCRHP3-201ENST00000451503 251 ntBASIC3.23□□□□□ -1.89
SKA1Q96BD8 AL441985.1-201ENST00000457727 251 ntBASIC3.23□□□□□ -1.89
SKA1Q96BD8 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
SKA1Q96BD8 AP001486.1-201ENST00000463339 476 ntBASIC3.23□□□□□ -1.89
SKA1Q96BD8 AC011825.1-201ENST00000484967 388 ntBASIC3.23□□□□□ -1.89
SKA1Q96BD8 AC091965.2-201ENST00000512324 613 ntBASIC3.23□□□□□ -1.89
SKA1Q96BD8 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.23□□□□□ -1.89
SKA1Q96BD8 SNORA18.6-201ENST00000516792 115 ntBASIC3.23□□□□□ -1.89
SKA1Q96BD8 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.23□□□□□ -1.89
SKA1Q96BD8 HSPE1P20-201ENST00000538133 289 ntBASIC3.23□□□□□ -1.89
SKA1Q96BD8 AC022080.3-201ENST00000544433 482 ntBASIC3.23□□□□□ -1.89
SKA1Q96BD8 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC3.23□□□□□ -1.89
SKA1Q96BD8 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.23□□□□□ -1.89
SKA1Q96BD8 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC3.23□□□□□ -1.89
SKA1Q96BD8 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.23□□□□□ -1.89
SKA1Q96BD8 AC005261.5-201ENST00000596280 355 ntBASIC3.23□□□□□ -1.89
SKA1Q96BD8 AC245014.2-201ENST00000603689 287 ntBASIC3.23□□□□□ -1.89
SKA1Q96BD8 AC246785.4-201ENST00000605374 287 ntBASIC3.23□□□□□ -1.89
SKA1Q96BD8 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.23□□□□□ -1.89
SKA1Q96BD8 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.23□□□□□ -1.89
SKA1Q96BD8 AC138649.3-201ENST00000622154 254 ntBASIC3.23□□□□□ -1.89
SKA1Q96BD8 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.23□□□□□ -1.89
SKA1Q96BD8 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.22□□□□□ -1.89
SKA1Q96BD8 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
SKA1Q96BD8 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.22□□□□□ -1.89
SKA1Q96BD8 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC3.22□□□□□ -1.89
SKA1Q96BD8 RNU6-179P-201ENST00000363350 107 ntBASIC3.22□□□□□ -1.89
SKA1Q96BD8 Y_RNA.201-201ENST00000364052 96 ntBASIC3.22□□□□□ -1.89
SKA1Q96BD8 SNORA51.4-201ENST00000364993 124 ntBASIC3.22□□□□□ -1.89
SKA1Q96BD8 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.22□□□□□ -1.89
SKA1Q96BD8 SNORA24.1-201ENST00000384401 135 ntBASIC3.22□□□□□ -1.89
SKA1Q96BD8 MIR147B-201ENST00000390185 80 ntBASIC3.22□□□□□ -1.89
SKA1Q96BD8 SNORA40C-201ENST00000391285 128 ntBASIC3.22□□□□□ -1.89
SKA1Q96BD8 SNORA26.7-201ENST00000391288 122 ntBASIC3.22□□□□□ -1.89
SKA1Q96BD8 RN7SKP142-201ENST00000411236 328 ntBASIC3.22□□□□□ -1.89
SKA1Q96BD8 RNU6-387P-201ENST00000411331 105 ntBASIC3.22□□□□□ -1.89
SKA1Q96BD8 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.22□□□□□ -1.89
SKA1Q96BD8 AC063979.1-201ENST00000415539 377 ntBASIC3.22□□□□□ -1.89
SKA1Q96BD8 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.22□□□□□ -1.89
SKA1Q96BD8 PTGES3P4-201ENST00000426243 356 ntBASIC3.22□□□□□ -1.89
SKA1Q96BD8 RPL21P2-201ENST00000440049 481 ntBASIC3.22□□□□□ -1.89
SKA1Q96BD8 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC3.22□□□□□ -1.89
SKA1Q96BD8 BTF3P15-201ENST00000455606 336 ntBASIC3.22□□□□□ -1.89
SKA1Q96BD8 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC3.22□□□□□ -1.89
SKA1Q96BD8 AC006445.1-201ENST00000491925 405 ntBASIC3.22□□□□□ -1.89
SKA1Q96BD8 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.22□□□□□ -1.89
SKA1Q96BD8 RNU6-123P-201ENST00000516163 102 ntBASIC3.22□□□□□ -1.89
SKA1Q96BD8 SCARNA24.1-201ENST00000516465 137 ntBASIC3.22□□□□□ -1.89
SKA1Q96BD8 RNU6-410P-201ENST00000517006 107 ntBASIC3.22□□□□□ -1.89
SKA1Q96BD8 CYCSP39-201ENST00000565821 309 ntBASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms