Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 PIGPP2-201ENST00000411569 458 ntBASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 NPM1P11-201ENST00000417106 855 ntBASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 AC063976.3-201ENST00000426849 329 ntBASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 Z98742.2-201ENST00000431564 187 ntBASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 AC087499.2-201ENST00000432861 149 ntBASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 MTND5P2-201ENST00000442927 1142 ntBASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 Z83846.1-201ENST00000446798 265 ntBASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 AL133217.1-201ENST00000450980 425 ntBASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 RPF2P2-201ENST00000504693 896 ntBASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 RNA5SP356-201ENST00000515972 94 ntBASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 RNU6-64P-201ENST00000517119 105 ntBASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 DEFB108A-201ENST00000530110 222 ntBASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 AP005136.1-201ENST00000579765 429 ntBASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 MIR3162-201ENST00000581818 82 ntBASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 AL161423.1-201ENST00000613700 262 ntBASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 AC024581.2-201ENST00000619986 252 ntBASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 AC012640.5-201ENST00000623897 319 ntBASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 HSPA8P4-201ENST00000511877 1920 ntBASIC2.46□□□□□ -2.02
ZNF540Q8NDQ6 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 RNU6-931P-201ENST00000363850 107 ntBASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 SNORA4.1-201ENST00000364263 144 ntBASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 SNORD23.1-201ENST00000408212 104 ntBASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 AC009518.2-201ENST00000418056 731 ntBASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 AL109913.1-201ENST00000421173 514 ntBASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 FCF1P1-201ENST00000432690 571 ntBASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 RPS27P27-201ENST00000498779 255 ntBASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 AP000907.2-201ENST00000530827 353 ntBASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 CYCSP26-201ENST00000534107 320 ntBASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 MIR4999-201ENST00000585029 91 ntBASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 VN1R82P-201ENST00000601481 356 ntBASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 AC018714.1-201ENST00000605028 208 ntBASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 AC097065.2-201ENST00000608159 533 ntBASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 AC244517.12-201ENST00000623581 663 ntBASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
ZNF540Q8NDQ6 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 RNA5SP240-201ENST00000365355 128 ntBASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 RNA5SP270-201ENST00000411361 118 ntBASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 TEX41-202ENST00000414256 604 ntTSL 5 BASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 MTND2P18-201ENST00000419962 1030 ntBASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 AC019097.1-201ENST00000424783 735 ntBASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 MTND5P25-201ENST00000430499 799 ntBASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 AL135938.1-201ENST00000443141 297 ntBASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 ZNF736P5Y-201ENST00000451173 805 ntBASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 KLF3P2-201ENST00000465138 268 ntBASIC2.44□□□□□ -2.02
ZNF540Q8NDQ6 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.44□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 125.7 ms