Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
HDDC3Q8N4P3 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 RNU6-288P-201ENST00000363690 104 ntBASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 Z98742.3-201ENST00000418637 326 ntBASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 AC006366.1-201ENST00000422002 759 ntBASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 BX276092.3-201ENST00000424182 230 ntBASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 PTGES3P4-201ENST00000426243 356 ntBASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 FABP5P14-201ENST00000437273 393 ntBASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 RPL22P17-201ENST00000438729 315 ntBASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 AC011816.1-201ENST00000441346 546 ntBASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 ZNF736P5Y-201ENST00000451173 805 ntBASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 SNORD97-201ENST00000459187 142 ntBASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 AC133134.1-201ENST00000466800 359 ntBASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 RNU1-104P-201ENST00000517280 175 ntBASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 AC010186.2-204ENST00000537668 439 ntBASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 AP001981.2-201ENST00000603241 418 ntBASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 AC008121.1-201ENST00000603244 268 ntBASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 AC007938.3-201ENST00000604965 623 ntBASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 AC013244.3-201ENST00000605614 388 ntBASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 U4.3-201ENST00000621047 82 ntBASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 PISRT1-201ENST00000626175 531 ntBASIC2.59□□□□□ -1.99
HDDC3Q8N4P3 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.59□□□□□ -2
HDDC3Q8N4P3 AC093536.2-201ENST00000565257 1406 ntBASIC2.59□□□□□ -2
HDDC3Q8N4P3 USP9YP6-201ENST00000413550 854 ntBASIC2.58□□□□□ -2
HDDC3Q8N4P3 Z98742.2-201ENST00000431564 187 ntBASIC2.58□□□□□ -2
HDDC3Q8N4P3 MICF-203ENST00000432679 129 ntBASIC2.58□□□□□ -2
HDDC3Q8N4P3 AL441985.1-201ENST00000457727 251 ntBASIC2.58□□□□□ -2
HDDC3Q8N4P3 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC2.58□□□□□ -2
HDDC3Q8N4P3 RPL39P36-201ENST00000490784 156 ntBASIC2.58□□□□□ -2
HDDC3Q8N4P3 AC020699.1-201ENST00000505161 445 ntBASIC2.58□□□□□ -2
HDDC3Q8N4P3 AC243972.3-201ENST00000539655 198 ntBASIC2.58□□□□□ -2
HDDC3Q8N4P3 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC2.58□□□□□ -2
HDDC3Q8N4P3 AC009063.1-201ENST00000563342 702 ntBASIC2.58□□□□□ -2
HDDC3Q8N4P3 DEFB122-202ENST00000569013 197 ntBASIC2.58□□□□□ -2
HDDC3Q8N4P3 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC2.58□□□□□ -2
HDDC3Q8N4P3 AP000811.1-201ENST00000603803 651 ntBASIC2.58□□□□□ -2
HDDC3Q8N4P3 AC091152.3-201ENST00000604227 325 ntBASIC2.58□□□□□ -2
HDDC3Q8N4P3 AC007363.1-201ENST00000604736 620 ntBASIC2.58□□□□□ -2
HDDC3Q8N4P3 AC069294.1-201ENST00000608397 350 ntBASIC2.58□□□□□ -2
HDDC3Q8N4P3 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC2.58□□□□□ -2
HDDC3Q8N4P3 AC005332.10-201ENST00000612725 619 ntBASIC2.58□□□□□ -2
HDDC3Q8N4P3 uc_338.14-201ENST00000613162 166 ntBASIC2.58□□□□□ -2
HDDC3Q8N4P3 AC068787.1-201ENST00000623908 691 ntBASIC2.58□□□□□ -2
HDDC3Q8N4P3 AC007490.1-201ENST00000624321 703 ntBASIC2.58□□□□□ -2
HDDC3Q8N4P3 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.58□□□□□ -2
HDDC3Q8N4P3 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.58□□□□□ -2
HDDC3Q8N4P3 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.57□□□□□ -2
HDDC3Q8N4P3 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
HDDC3Q8N4P3 RNU6-660P-201ENST00000364566 109 ntBASIC2.57□□□□□ -2
HDDC3Q8N4P3 MIR27B-201ENST00000385129 97 ntBASIC2.57□□□□□ -2
HDDC3Q8N4P3 ANAPC10P1-201ENST00000395991 556 ntBASIC2.57□□□□□ -2
HDDC3Q8N4P3 RPS20P2-201ENST00000402520 389 ntBASIC2.57□□□□□ -2
HDDC3Q8N4P3 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.57□□□□□ -2
HDDC3Q8N4P3 RNU6-920P-201ENST00000410926 92 ntBASIC2.57□□□□□ -2
HDDC3Q8N4P3 AC007064.1-201ENST00000412238 351 ntBASIC2.57□□□□□ -2
HDDC3Q8N4P3 AC009963.1-201ENST00000417265 157 ntBASIC2.57□□□□□ -2
HDDC3Q8N4P3 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC2.57□□□□□ -2
HDDC3Q8N4P3 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.57□□□□□ -2
HDDC3Q8N4P3 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC2.57□□□□□ -2
HDDC3Q8N4P3 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.57□□□□□ -2
HDDC3Q8N4P3 snoU13.23-201ENST00000458863 104 ntBASIC2.57□□□□□ -2
HDDC3Q8N4P3 AC008571.1-201ENST00000467232 300 ntBASIC2.57□□□□□ -2
HDDC3Q8N4P3 RPL9P33-201ENST00000484311 566 ntBASIC2.57□□□□□ -2
HDDC3Q8N4P3 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC2.57□□□□□ -2
HDDC3Q8N4P3 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.57□□□□□ -2
HDDC3Q8N4P3 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.57□□□□□ -2
HDDC3Q8N4P3 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.57□□□□□ -2
HDDC3Q8N4P3 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC2.57□□□□□ -2
HDDC3Q8N4P3 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC2.57□□□□□ -2
HDDC3Q8N4P3 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC2.57□□□□□ -2
HDDC3Q8N4P3 RN7SKP24-201ENST00000515888 284 ntBASIC2.57□□□□□ -2
HDDC3Q8N4P3 RNA5SP320-201ENST00000516263 124 ntBASIC2.57□□□□□ -2
HDDC3Q8N4P3 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.57□□□□□ -2
HDDC3Q8N4P3 AC123904.2-201ENST00000548059 300 ntBASIC2.57□□□□□ -2
HDDC3Q8N4P3 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2.57□□□□□ -2
HDDC3Q8N4P3 MIR4782-201ENST00000577987 79 ntBASIC2.57□□□□□ -2
HDDC3Q8N4P3 MIR4648-201ENST00000580107 72 ntBASIC2.57□□□□□ -2
HDDC3Q8N4P3 MIR4999-201ENST00000585029 91 ntBASIC2.57□□□□□ -2
HDDC3Q8N4P3 AL358072.1-201ENST00000604156 575 ntBASIC2.57□□□□□ -2
HDDC3Q8N4P3 AC121334.2-201ENST00000605387 271 ntBASIC2.57□□□□□ -2
HDDC3Q8N4P3 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC2.57□□□□□ -2
HDDC3Q8N4P3 AC009159.1-201ENST00000618386 642 ntBASIC2.57□□□□□ -2
HDDC3Q8N4P3 CR381653.2-201ENST00000624041 768 ntBASIC2.57□□□□□ -2
HDDC3Q8N4P3 AL512643.1-201ENST00000635735 524 ntBASIC2.57□□□□□ -2
HDDC3Q8N4P3 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.57□□□□□ -2
HDDC3Q8N4P3 AL359854.1-201ENST00000614203 1594 ntBASIC2.57□□□□□ -2
HDDC3Q8N4P3 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms