Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 AC093019.1-201ENST00000443135 252 ntBASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 BTF3P15-201ENST00000455606 336 ntBASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 RNU7-23P-201ENST00000459465 62 ntBASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 AC111000.3-201ENST00000508057 576 ntBASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 TGIF1P1-201ENST00000558095 802 ntBASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 AC069061.3-201ENST00000582254 823 ntBASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 MIR3942-201ENST00000585264 109 ntBASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 HMGN2P15-201ENST00000585707 270 ntBASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 AL161729.3-201ENST00000603533 673 ntBASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 APOOP1-201ENST00000604695 592 ntBASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 RNU6-85P-201ENST00000605989 107 ntBASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 AL049539.1-201ENST00000611964 459 ntBASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.31□□□□□ -1.88
CCDC28AQ8IWP9 ATP8A2P2-201ENST00000437678 1568 ntBASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 Y_RNA.263-201ENST00000364659 114 ntBASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 AP002088.1-201ENST00000382740 395 ntBASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 RPS26P8-201ENST00000393490 348 ntBASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 RNU2-41P-201ENST00000410991 178 ntBASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 RNA5SP31-201ENST00000411144 127 ntBASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 AL359672.1-201ENST00000442302 409 ntBASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 SNRPEP8-201ENST00000442866 260 ntBASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 PHBP16-201ENST00000446318 950 ntBASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 MTND1P11-201ENST00000456661 876 ntBASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 RPL7P43-201ENST00000478876 753 ntBASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 CDH12P4-201ENST00000517835 295 ntBASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 CDH12P3-201ENST00000517935 295 ntBASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 CDH12P1-201ENST00000518435 295 ntBASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 AL163153.1-201ENST00000554223 283 ntBASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 AC023575.1-201ENST00000580510 358 ntBASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 OR1M4P-201ENST00000589199 287 ntBASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 AC004852.3-201ENST00000614131 326 ntBASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 ATP5A1P2-202ENST00000616464 443 ntBASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 MIR6719-201ENST00000622428 87 ntBASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 Z69720.2-201ENST00000624755 279 ntBASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 SCARNA4-202ENST00000625402 129 ntBASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
CCDC28AQ8IWP9 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 AC138393.1-203ENST00000327086 343 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 Y_RNA.301-201ENST00000364990 103 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 MIR3065-201ENST00000390137 79 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 HLFP1-201ENST00000402375 499 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 AL356432.1-201ENST00000405809 419 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 MIR1179-201ENST00000408703 91 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 RAB28P1-201ENST00000411517 641 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 BX679664.1-201ENST00000434429 253 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 AC005019.1-201ENST00000436455 431 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 CYCSP32-201ENST00000440548 321 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 AC098831.1-201ENST00000440661 216 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 MRPL50P4-201ENST00000446432 475 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 AC233279.1-201ENST00000455300 423 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 AL031183.1-201ENST00000457667 207 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 AC091179.1-201ENST00000461606 579 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 NDUFA5P12-201ENST00000503796 343 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 AC103851.1-201ENST00000506833 274 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 HMGN1P11-201ENST00000508668 303 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 SNORD59.2-201ENST00000516873 68 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 AC068657.1-201ENST00000520807 306 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 AC006064.5-201ENST00000541782 248 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 AC025423.5-201ENST00000550230 219 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 MIR3672-201ENST00000584290 82 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 AC023043.2-201ENST00000589678 1026 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 AL161629.2-201ENST00000615347 275 ntBASIC3.29□□□□□ -1.88
CCDC28AQ8IWP9 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms