Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 CYP3A137P-201ENST00000562436 69 ntBASIC1.34□□□□□ -2.19
USP54Q70EL1 AL049641.1-201ENST00000441055 1948 ntBASIC1.34□□□□□ -2.2
USP54Q70EL1 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.34□□□□□ -2.2
USP54Q70EL1 AC010889.1-201ENST00000566193 2666 ntBASIC1.34□□□□□ -2.2
USP54Q70EL1 CISD1P1-201ENST00000393907 327 ntBASIC1.33□□□□□ -2.2
USP54Q70EL1 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.33□□□□□ -2.2
USP54Q70EL1 FGF7P5-201ENST00000441829 291 ntBASIC1.33□□□□□ -2.2
USP54Q70EL1 Z82190.1-201ENST00000454534 490 ntBASIC1.33□□□□□ -2.2
USP54Q70EL1 AC107626.1-201ENST00000471084 183 ntBASIC1.33□□□□□ -2.2
USP54Q70EL1 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC1.33□□□□□ -2.2
USP54Q70EL1 VBP1-203ENST00000535916 944 ntTSL 2 BASIC1.33□□□□□ -2.2
USP54Q70EL1 AC010186.2-204ENST00000537668 439 ntBASIC1.33□□□□□ -2.2
USP54Q70EL1 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC1.33□□□□□ -2.2
USP54Q70EL1 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC1.33□□□□□ -2.2
USP54Q70EL1 AC022387.2-201ENST00000604050 448 ntBASIC1.33□□□□□ -2.2
USP54Q70EL1 AC112191.3-201ENST00000604371 277 ntBASIC1.33□□□□□ -2.2
USP54Q70EL1 AL020996.3-201ENST00000606617 222 ntBASIC1.33□□□□□ -2.2
USP54Q70EL1 AC103810.9-201ENST00000606688 112 ntBASIC1.33□□□□□ -2.2
USP54Q70EL1 AC004908.2-201ENST00000609090 574 ntBASIC1.33□□□□□ -2.2
USP54Q70EL1 AL356585.4-201ENST00000623078 1229 ntBASIC1.33□□□□□ -2.2
USP54Q70EL1 AC091812.1-201ENST00000432235 1948 ntBASIC1.33□□□□□ -2.2
USP54Q70EL1 RNU6-251P-201ENST00000363235 104 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 RNU6-921P-201ENST00000384361 107 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
USP54Q70EL1 AL121978.1-201ENST00000402778 359 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 AL512604.1-201ENST00000404812 257 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 USP9YP19-201ENST00000412165 485 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 FCF1P2-201ENST00000415284 583 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 USP9YP13-201ENST00000417797 480 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 MRPS17P3-201ENST00000465453 385 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 AC092757.1-201ENST00000467293 467 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 RPL31P58-201ENST00000469001 379 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 AC093852.1-201ENST00000503587 266 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 RNU6-760P-201ENST00000516078 97 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 SNORA48.10-201ENST00000516965 160 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 AC124293.1-201ENST00000530034 493 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC1.32□□□□□ -2.2
USP54Q70EL1 AC079148.1-201ENST00000565944 819 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 AC007151.1-201ENST00000572774 483 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 SNORD39.3-201ENST00000584451 71 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 MIR4295-201ENST00000585286 85 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC1.32□□□□□ -2.2
USP54Q70EL1 GAS5-AS1-201ENST00000602767 694 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 AL161729.4-201ENST00000604650 476 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 AC073569.3-201ENST00000619055 682 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 AC068057.2-201ENST00000624047 895 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 RNU6-1155P-201ENST00000363554 107 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC1.32□□□□□ -2.2
USP54Q70EL1 XKRYP1-201ENST00000423438 492 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 AL022400.1-201ENST00000423946 935 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 TRIM60P13-201ENST00000432350 1283 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 XKRYP2-201ENST00000432915 492 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 TAAR7P-201ENST00000436141 242 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 AL049734.2-201ENST00000441066 616 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 HMGN2P10-201ENST00000448085 265 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 AL583843.1-201ENST00000456070 346 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 AC055731.1-201ENST00000474387 401 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 AC021382.1-201ENST00000483523 359 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 AP003066.2-201ENST00000529375 555 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC1.32□□□□□ -2.2
USP54Q70EL1 CYCSP2-201ENST00000558168 301 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC1.32□□□□□ -2.2
USP54Q70EL1 AL050343.2-201ENST00000607338 280 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 AC007038.2-201ENST00000608095 740 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 AL627230.6-201ENST00000611129 280 ntBASIC1.32□□□□□ -2.2
USP54Q70EL1 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
USP54Q70EL1 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC1.32□□□□□ -2.2
USP54Q70EL1 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.31□□□□□ -2.2
USP54Q70EL1 RPL23AP3-201ENST00000453844 468 ntBASIC1.31□□□□□ -2.2
USP54Q70EL1 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC1.31□□□□□ -2.2
USP54Q70EL1 AC114786.4-201ENST00000508771 728 ntBASIC1.31□□□□□ -2.2
USP54Q70EL1 AC114797.1-201ENST00000514003 728 ntBASIC1.31□□□□□ -2.2
USP54Q70EL1 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC1.31□□□□□ -2.2
USP54Q70EL1 EIF1AXP2-201ENST00000555940 413 ntBASIC1.31□□□□□ -2.2
USP54Q70EL1 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC1.31□□□□□ -2.2
USP54Q70EL1 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC1.31□□□□□ -2.2
USP54Q70EL1 MIR3973-201ENST00000579824 107 ntBASIC1.31□□□□□ -2.2
USP54Q70EL1 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.31□□□□□ -2.2
USP54Q70EL1 MTND4LP5-201ENST00000605152 292 ntBASIC1.31□□□□□ -2.2
USP54Q70EL1 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.31□□□□□ -2.2
USP54Q70EL1 AC009318.4-201ENST00000620496 486 ntBASIC1.31□□□□□ -2.2
USP54Q70EL1 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.31□□□□□ -2.2
USP54Q70EL1 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.31□□□□□ -2.2
USP54Q70EL1 Y_RNA.30-201ENST00000362572 97 ntBASIC1.3□□□□□ -2.2
USP54Q70EL1 RNU6-882P-201ENST00000391025 103 ntBASIC1.3□□□□□ -2.2
USP54Q70EL1 CYCSP48-201ENST00000417124 323 ntBASIC1.3□□□□□ -2.2
USP54Q70EL1 AL445305.1-201ENST00000432577 575 ntBASIC1.3□□□□□ -2.2
USP54Q70EL1 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC1.3□□□□□ -2.2
USP54Q70EL1 COX7A2P2-201ENST00000505291 250 ntBASIC1.3□□□□□ -2.2
USP54Q70EL1 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC1.3□□□□□ -2.2
USP54Q70EL1 MAL2-206ENST00000522187 547 ntTSL 4 BASIC1.3□□□□□ -2.2
USP54Q70EL1 HMGN2P15-201ENST00000585707 270 ntBASIC1.3□□□□□ -2.2
USP54Q70EL1 AC211469.2-201ENST00000605461 205 ntBASIC1.3□□□□□ -2.2
USP54Q70EL1 GDI2P1-201ENST00000429312 1336 ntBASIC1.3□□□□□ -2.2
USP54Q70EL1 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
USP54Q70EL1 RNU11-5P-201ENST00000391216 129 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 AL109913.1-201ENST00000421173 514 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 MTCO3P46-201ENST00000425787 232 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 RPL31P54-201ENST00000429803 370 ntBASIC1.29□□□□□ -2.2
USP54Q70EL1 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms