Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 uc_338.1-201ENST00000612113 180 ntBASIC3.93□□□□□ -1.78
VPS53Q5VIR6 MIR7112-201ENST00000616126 65 ntBASIC3.93□□□□□ -1.78
VPS53Q5VIR6 MIR7153-201ENST00000637758 57 ntBASIC3.93□□□□□ -1.78
VPS53Q5VIR6 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS53Q5VIR6 AL137003.2-201ENST00000606924 2538 ntBASIC3.93□□□□□ -1.78
VPS53Q5VIR6 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
VPS53Q5VIR6 Z83843.1-201ENST00000604070 3685 ntBASIC3.92□□□□□ -1.78
VPS53Q5VIR6 RNU6-179P-201ENST00000363350 107 ntBASIC3.92□□□□□ -1.78
VPS53Q5VIR6 SNORD46.1-201ENST00000364139 104 ntBASIC3.92□□□□□ -1.78
VPS53Q5VIR6 RNA5SP72-201ENST00000364442 117 ntBASIC3.92□□□□□ -1.78
VPS53Q5VIR6 RNU4-76P-201ENST00000364509 141 ntBASIC3.92□□□□□ -1.78
VPS53Q5VIR6 Y_RNA.813-201ENST00000364639 102 ntBASIC3.92□□□□□ -1.78
VPS53Q5VIR6 RNU6-76P-201ENST00000384060 104 ntBASIC3.92□□□□□ -1.78
VPS53Q5VIR6 MIR34B-201ENST00000385076 84 ntBASIC3.92□□□□□ -1.78
VPS53Q5VIR6 RNU2-29P-201ENST00000410423 189 ntBASIC3.92□□□□□ -1.78
VPS53Q5VIR6 RPS15AP6-201ENST00000420703 385 ntBASIC3.92□□□□□ -1.78
VPS53Q5VIR6 UBE2D3P2-201ENST00000424409 445 ntBASIC3.92□□□□□ -1.78
VPS53Q5VIR6 MTCO3P46-201ENST00000425787 232 ntBASIC3.92□□□□□ -1.78
VPS53Q5VIR6 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.92□□□□□ -1.78
VPS53Q5VIR6 AC090774.1-201ENST00000435925 246 ntBASIC3.92□□□□□ -1.78
VPS53Q5VIR6 HMGN2P20-201ENST00000437531 273 ntBASIC3.92□□□□□ -1.78
VPS53Q5VIR6 MTND1P18-201ENST00000448191 573 ntBASIC3.92□□□□□ -1.78
VPS53Q5VIR6 AC008481.1-201ENST00000463278 396 ntBASIC3.92□□□□□ -1.78
VPS53Q5VIR6 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
VPS53Q5VIR6 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.92□□□□□ -1.78
VPS53Q5VIR6 RNU4-29P-201ENST00000515943 174 ntBASIC3.92□□□□□ -1.78
VPS53Q5VIR6 SNORA70.16-201ENST00000516390 95 ntBASIC3.92□□□□□ -1.78
VPS53Q5VIR6 ERHP1-201ENST00000523006 310 ntBASIC3.92□□□□□ -1.78
VPS53Q5VIR6 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS53Q5VIR6 CBX3P7-201ENST00000532876 502 ntBASIC3.92□□□□□ -1.78
VPS53Q5VIR6 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS53Q5VIR6 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS53Q5VIR6 PLCE1P1-201ENST00000622094 305 ntBASIC3.92□□□□□ -1.78
VPS53Q5VIR6 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
VPS53Q5VIR6 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
VPS53Q5VIR6 AC091152.2-201ENST00000591628 2569 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 RNU6-552P-201ENST00000362869 119 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS53Q5VIR6 MIR514A2-201ENST00000385131 88 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 MIR514A3-201ENST00000385132 88 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 AL359634.1-202ENST00000404721 284 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 AL162578.1-201ENST00000406202 378 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 RNA5SP120-201ENST00000410900 112 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 AC009161.1-201ENST00000417306 376 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 AC245291.1-201ENST00000419501 328 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 AL158156.1-201ENST00000422509 473 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS53Q5VIR6 RPL26P6-201ENST00000440913 438 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.91□□□□□ -1.78
VPS53Q5VIR6 BX510359.1-201ENST00000456973 237 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 RPS29P15-201ENST00000458329 171 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 RPL23AP11-201ENST00000475260 469 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 AC091885.1-201ENST00000506658 268 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC3.91□□□□□ -1.78
VPS53Q5VIR6 FGF7P4-201ENST00000509595 295 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 APOOP4-201ENST00000513530 597 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 SNORA64.4-201ENST00000516632 81 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 GLYCAM1-201ENST00000546596 285 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 AC125611.2-201ENST00000551907 647 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.91□□□□□ -1.78
VPS53Q5VIR6 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC3.91□□□□□ -1.78
VPS53Q5VIR6 MIR4703-201ENST00000577728 79 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 MIR4474-201ENST00000579189 78 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 AC024619.4-201ENST00000580924 316 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 VN1R80P-201ENST00000597126 338 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 AL670379.6-201ENST00000603753 252 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 AL670379.11-201ENST00000604059 253 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 AC008162.1-201ENST00000604718 254 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 AL670379.1-201ENST00000604752 252 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 AL670379.5-201ENST00000605253 252 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 AL670379.12-201ENST00000605291 253 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 AL670379.8-201ENST00000605353 252 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 AL670379.7-201ENST00000605823 252 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 XIST_intron.1-201ENST00000619444 68 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 AC100810.6-201ENST00000638068 285 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 ZNF826P-207ENST00000622273 1910 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
VPS53Q5VIR6 ASNSP3-201ENST00000451989 1306 ntBASIC3.91□□□□□ -1.78
VPS53Q5VIR6 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
VPS53Q5VIR6 CUL1P1-201ENST00000509510 2425 ntBASIC3.9□□□□□ -1.78
VPS53Q5VIR6 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.9□□□□□ -1.78
VPS53Q5VIR6 SNORD56.3-201ENST00000363507 71 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 Y_RNA.231-201ENST00000364358 102 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 RNU6-805P-201ENST00000365643 106 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 RNU6-1029P-201ENST00000384109 107 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 Y_RNA.509-201ENST00000384506 99 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 RNU6-332P-201ENST00000391193 108 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 RNU6-903P-201ENST00000391270 109 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 U3.42-201ENST00000408746 214 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 RNA5SP293-201ENST00000410527 113 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC3.9□□□□□ -1.79
VPS53Q5VIR6 PDCL2P1-201ENST00000419302 352 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.9□□□□□ -1.79
VPS53Q5VIR6 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.9□□□□□ -1.79
VPS53Q5VIR6 RPL23AP22-201ENST00000437556 453 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 CST9LP2-201ENST00000437612 320 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 MTND3P16-201ENST00000452205 344 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 HMGN2P26-201ENST00000463169 339 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 RN7SL432P-201ENST00000484057 298 ntBASIC3.9□□□□□ -1.79
VPS53Q5VIR6 AC092436.1-201ENST00000506450 503 ntBASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms