Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 U6.114-201ENST00000636407 96 ntBASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
PDLIM3Q53GG5 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 AC017071.1-201ENST00000564407 2204 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 RNU6-1097P-201ENST00000363586 107 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 Y_RNA.245-201ENST00000364493 95 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 RNU6-108P-201ENST00000365558 107 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 RNU6-74P-201ENST00000384235 107 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 MTCO3P40-201ENST00000392516 676 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 AL139039.1-201ENST00000401900 692 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 RN7SKP111-201ENST00000410349 271 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 RPS12P24-201ENST00000412619 387 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 USP9YP6-201ENST00000413550 854 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 AL031779.1-201ENST00000415663 330 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 ZNF885P-201ENST00000420174 1098 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 AC012498.1-201ENST00000424037 437 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 MTCO2P19-201ENST00000427513 598 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 RPL23AP22-201ENST00000437556 453 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 CECR9-201ENST00000453421 199 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 AL162395.1-201ENST00000457882 422 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 AC126389.1-201ENST00000477436 290 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 AL135752.1-201ENST00000479477 471 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 HMGB1P29-201ENST00000505659 499 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 Y_RNA.673-201ENST00000516306 88 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 MIR2276-201ENST00000516886 89 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 RNU6-677P-201ENST00000516914 101 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 RNU6-56P-201ENST00000516986 93 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 AC068792.1-201ENST00000621354 417 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 MTND1P37-201ENST00000636562 264 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 AC119674.1-207ENST00000641355 633 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 ZNF680P1-201ENST00000436625 1469 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 AC007823.1-201ENST00000569932 1566 ntBASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.81□□□□□ -1.96
PDLIM3Q53GG5 Z83843.1-201ENST00000604070 3685 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 AC138915.1-201ENST00000565427 1685 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 RNA5SP383-201ENST00000362934 120 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 DYNLT3P1-201ENST00000378574 347 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 RNU6-741P-201ENST00000383889 107 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 Y_RNA.554-201ENST00000384672 102 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 CISD1P1-201ENST00000393907 327 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 AL445529.1-201ENST00000398713 389 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 RPL23AP69-201ENST00000431134 458 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 DNAJC19P4-201ENST00000440115 345 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 Z99127.3-201ENST00000448158 395 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 RPL12P25-201ENST00000455592 494 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 RNU6-420P-201ENST00000458780 107 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 RNU6-953P-201ENST00000459154 107 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 AL160314.1-201ENST00000490836 438 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 YWHAEP4-201ENST00000505390 198 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 AC009901.1-201ENST00000506703 541 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 RAC1P5-201ENST00000512182 576 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 RNA5SP341-201ENST00000516261 117 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 HIGD1AP1-201ENST00000550979 275 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 TRAV28-201ENST00000557548 323 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 AC010546.1-201ENST00000569391 485 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 EIF1P4-201ENST00000572664 335 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 AC024619.4-201ENST00000580924 316 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 AC020895.1-201ENST00000595362 272 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 AC022893.3-201ENST00000607665 437 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 MIR7851-201ENST00000610611 160 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 AC122108.2-201ENST00000611946 526 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 AC034102.8-201ENST00000615146 484 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 AC002064.3-201ENST00000623448 346 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 AL359740.1-201ENST00000624340 592 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 AL512643.1-201ENST00000635735 524 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 Z99571.1-201ENST00000636677 394 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 AC068137.3-201ENST00000639191 341 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 AC073869.6-201ENST00000640656 341 ntBASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
PDLIM3Q53GG5 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 138.2 ms