Protein–RNA interactions for Protein: Q53GD3

SLC44A4, Choline transporter-like protein 4, humanhuman

Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A4Q53GD3 RANP9-201ENST00000519957 271 ntBASIC3.83□□□□□ -1.8
SLC44A4Q53GD3 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.83□□□□□ -1.8
SLC44A4Q53GD3 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.83□□□□□ -1.8
SLC44A4Q53GD3 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.83□□□□□ -1.8
SLC44A4Q53GD3 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.83□□□□□ -1.8
SLC44A4Q53GD3 SCOCP1-201ENST00000554676 349 ntBASIC3.83□□□□□ -1.8
SLC44A4Q53GD3 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.83□□□□□ -1.8
SLC44A4Q53GD3 MIR3921-201ENST00000577308 85 ntBASIC3.83□□□□□ -1.8
SLC44A4Q53GD3 AC007687.1-201ENST00000602704 304 ntBASIC3.83□□□□□ -1.8
SLC44A4Q53GD3 AC104763.2-201ENST00000604179 382 ntBASIC3.83□□□□□ -1.8
SLC44A4Q53GD3 AL670379.4-201ENST00000605279 254 ntBASIC3.83□□□□□ -1.8
SLC44A4Q53GD3 AP001486.3-201ENST00000615334 372 ntBASIC3.83□□□□□ -1.8
SLC44A4Q53GD3 MTND5P42-201ENST00000637720 498 ntBASIC3.83□□□□□ -1.8
SLC44A4Q53GD3 MFSD8-236ENST00000641509 4050 ntBASIC3.83□□□□□ -1.8
SLC44A4Q53GD3 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
SLC44A4Q53GD3 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.83□□□□□ -1.8
SLC44A4Q53GD3 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.83□□□□□ -1.8
SLC44A4Q53GD3 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.83□□□□□ -1.8
SLC44A4Q53GD3 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
SLC44A4Q53GD3 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 Y_RNA.138-201ENST00000363462 102 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 EI24P2-201ENST00000397776 1076 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 Y_RNA.615-201ENST00000410769 117 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 RNU2-71P-201ENST00000411395 189 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 YPEL5P1-201ENST00000419731 367 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 RPL7P46-201ENST00000425129 740 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 MTCO2P12-201ENST00000427426 682 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 CYCSP4-201ENST00000429682 331 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 AL591212.2-201ENST00000433923 257 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 IFNA20P-201ENST00000436840 528 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 RPL23AP62-201ENST00000463396 453 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 RPL21P10-201ENST00000463521 490 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 RN7SL807P-201ENST00000470923 297 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 AC026784.1-201ENST00000507986 352 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 SCARNA15.2-201ENST00000516409 127 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 RNU6-677P-201ENST00000516914 101 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 AP005639.2-201ENST00000527592 928 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 AC106782.4-201ENST00000568264 210 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 SNORA62.6-201ENST00000606322 83 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 Y_RNA.812-201ENST00000610788 101 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 Y_RNA.784-201ENST00000613803 101 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 MIR8058-201ENST00000615737 89 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 Y_RNA.787-201ENST00000616522 101 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 Y_RNA.780-201ENST00000617336 101 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 Y_RNA.801-201ENST00000619005 101 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 AC006504.1-201ENST00000562493 3666 ntBASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SLC44A4Q53GD3 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 AL139276.1-201ENST00000311910 1001 ntBASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 Y_RNA.132-201ENST00000363421 102 ntBASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 Y_RNA.184-201ENST00000363884 108 ntBASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 DEFB109C-201ENST00000382575 264 ntBASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 DEFB109B-201ENST00000382656 264 ntBASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 AL139039.1-201ENST00000401900 692 ntBASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 AL606923.1-201ENST00000406616 190 ntBASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 RNU2-29P-201ENST00000410423 189 ntBASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 RNA5SP120-201ENST00000410900 112 ntBASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 NDUFB4P5-201ENST00000415445 361 ntBASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 SRIP2-201ENST00000428470 166 ntBASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 MTND3P16-201ENST00000452205 344 ntBASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 HMGB3P15-201ENST00000507326 574 ntBASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 RNU4-29P-201ENST00000515943 174 ntBASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 RNU4-49P-201ENST00000516080 140 ntBASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 RNU6-927P-201ENST00000516199 100 ntBASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 RANP3-201ENST00000530970 276 ntBASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 AL121576.1-201ENST00000556055 276 ntBASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 AL121821.2-201ENST00000556081 394 ntBASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 AC022893.3-201ENST00000607665 437 ntBASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 uc_338.5-201ENST00000611839 155 ntBASIC3.81□□□□□ -1.8
SLC44A4Q53GD3 RNVU1-4-201ENST00000612985 164 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 122.8 ms