Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RNU6-1077P-201ENST00000410506 102 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 AC007390.1-201ENST00000415722 356 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 AC245291.1-201ENST00000419501 328 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC3.19□□□□□ -1.9
COL28A1Q2UY09 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
COL28A1Q2UY09 MTCYBP5-201ENST00000423752 1135 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 ZNF863P-201ENST00000426746 417 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 AL591212.2-201ENST00000433923 257 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 HMGB3P11-201ENST00000440127 604 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC3.19□□□□□ -1.9
COL28A1Q2UY09 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC3.19□□□□□ -1.9
COL28A1Q2UY09 DPPA3P1-201ENST00000448050 469 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 AL513124.1-201ENST00000450410 614 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 FDX1P2-201ENST00000450769 375 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.19□□□□□ -1.9
COL28A1Q2UY09 AC093899.1-201ENST00000457984 376 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 SRRM1P2-201ENST00000464531 1192 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 GMFBP1-201ENST00000467831 427 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 AC012181.1-201ENST00000479895 423 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 ARL4AP2-201ENST00000507378 601 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 AC006445.2-201ENST00000510061 472 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 AC105417.1-201ENST00000514691 285 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC3.19□□□□□ -1.9
COL28A1Q2UY09 AP006245.1-201ENST00000522549 120 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 ZDHHC20P3-201ENST00000531576 336 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 AP002404.1-201ENST00000532005 451 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 AC026333.2-201ENST00000542164 106 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC3.19□□□□□ -1.9
COL28A1Q2UY09 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.19□□□□□ -1.9
COL28A1Q2UY09 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.19□□□□□ -1.9
COL28A1Q2UY09 AL162713.1-201ENST00000604480 262 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 AC092954.2-201ENST00000609103 430 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 AC068792.1-201ENST00000621354 417 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 MIR7843-201ENST00000622274 79 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 SNORA50A-202ENST00000629536 136 ntBASIC3.19□□□□□ -1.9
COL28A1Q2UY09 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3.19□□□□□ -1.9
COL28A1Q2UY09 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
COL28A1Q2UY09 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC3.19□□□□□ -1.9
COL28A1Q2UY09 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL28A1Q2UY09 AC091152.2-201ENST00000591628 2569 ntBASIC3.18□□□□□ -1.9
COL28A1Q2UY09 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.18□□□□□ -1.9
COL28A1Q2UY09 AL139276.1-201ENST00000311910 1001 ntBASIC3.18□□□□□ -1.9
COL28A1Q2UY09 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
COL28A1Q2UY09 RNU6-1085P-201ENST00000363576 107 ntBASIC3.18□□□□□ -1.9
COL28A1Q2UY09 RNU6-1322P-201ENST00000364309 107 ntBASIC3.18□□□□□ -1.9
COL28A1Q2UY09 SNORD115-7-201ENST00000365306 82 ntBASIC3.18□□□□□ -1.9
COL28A1Q2UY09 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
COL28A1Q2UY09 RNA5SP38-201ENST00000410750 119 ntBASIC3.18□□□□□ -1.9
COL28A1Q2UY09 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.18□□□□□ -1.9
COL28A1Q2UY09 AC126124.2-201ENST00000413542 321 ntBASIC3.18□□□□□ -1.9
COL28A1Q2UY09 BTF3L4P3-201ENST00000418879 476 ntBASIC3.18□□□□□ -1.9
COL28A1Q2UY09 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
COL28A1Q2UY09 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC3.18□□□□□ -1.9
COL28A1Q2UY09 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.18□□□□□ -1.9
COL28A1Q2UY09 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.18□□□□□ -1.9
COL28A1Q2UY09 AC027673.1-201ENST00000456245 405 ntBASIC3.18□□□□□ -1.9
COL28A1Q2UY09 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.18□□□□□ -1.9
COL28A1Q2UY09 AC009646.1-201ENST00000510455 318 ntBASIC3.18□□□□□ -1.9
COL28A1Q2UY09 SNORA31.1-201ENST00000515993 133 ntBASIC3.18□□□□□ -1.9
COL28A1Q2UY09 SNORA31.5-201ENST00000516190 133 ntBASIC3.18□□□□□ -1.9
COL28A1Q2UY09 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC3.18□□□□□ -1.9
COL28A1Q2UY09 AC104383.1-201ENST00000530297 370 ntBASIC3.18□□□□□ -1.9
COL28A1Q2UY09 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC3.18□□□□□ -1.9
COL28A1Q2UY09 ADI1P3-201ENST00000549509 470 ntBASIC3.18□□□□□ -1.9
COL28A1Q2UY09 HMGB1P33-201ENST00000563485 527 ntBASIC3.18□□□□□ -1.9
COL28A1Q2UY09 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC3.18□□□□□ -1.9
COL28A1Q2UY09 AC008521.1-201ENST00000587471 187 ntBASIC3.18□□□□□ -1.9
COL28A1Q2UY09 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC3.18□□□□□ -1.9
COL28A1Q2UY09 BNIP3P9-201ENST00000603714 553 ntBASIC3.18□□□□□ -1.9
COL28A1Q2UY09 AP001596.2-201ENST00000608410 312 ntBASIC3.18□□□□□ -1.9
COL28A1Q2UY09 XIST_intron.1-201ENST00000619444 68 ntBASIC3.18□□□□□ -1.9
COL28A1Q2UY09 AC022149.2-201ENST00000621061 203 ntBASIC3.18□□□□□ -1.9
COL28A1Q2UY09 AC006111.3-201ENST00000622137 383 ntBASIC3.18□□□□□ -1.9
COL28A1Q2UY09 AC139792.3-201ENST00000623525 224 ntBASIC3.18□□□□□ -1.9
COL28A1Q2UY09 SRP54-214ENST00000630962 162 ntTSL 5 BASIC3.18□□□□□ -1.9
COL28A1Q2UY09 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.18□□□□□ -1.9
COL28A1Q2UY09 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.18□□□□□ -1.9
COL28A1Q2UY09 AC068137.3-201ENST00000639191 341 ntBASIC3.18□□□□□ -1.9
COL28A1Q2UY09 AC073869.6-201ENST00000640656 341 ntBASIC3.18□□□□□ -1.9
COL28A1Q2UY09 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.18□□□□□ -1.9
COL28A1Q2UY09 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL28A1Q2UY09 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 MFSD8-233ENST00000641482 4860 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 MTND4P5-201ENST00000435821 1374 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 AC093010.3-201ENST00000570269 15214 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 AC007256.1-201ENST00000392253 2765 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
COL28A1Q2UY09 OR4G2P-201ENST00000328113 903 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 RNA5SP383-201ENST00000362934 120 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 RNU6-288P-201ENST00000363690 104 ntBASIC3.17□□□□□ -1.9
COL28A1Q2UY09 SNORA62.1-201ENST00000364287 154 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 128.2 ms