Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AL592148.2-201ENST00000612210 372 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 DUSP12P1-201ENST00000612874 516 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC0.43□□□□□ -2.34
COL7A1Q02388 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC0.43□□□□□ -2.34
COL7A1Q02388 Y_RNA.100-201ENST00000363141 102 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 RNU6-629P-201ENST00000384061 103 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 Y_RNA.552-201ENST00000384665 112 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 RNU6-1072P-201ENST00000384703 107 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 RNU6-443P-201ENST00000384780 107 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 MIR1250-201ENST00000408098 113 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 AL606495.1-201ENST00000422100 813 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 AL606489.2-201ENST00000433886 234 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 Z80107.1-201ENST00000436830 412 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC0.43□□□□□ -2.34
COL7A1Q02388 AC027575.1-201ENST00000481064 460 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 RPS27P23-201ENST00000487608 251 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC0.43□□□□□ -2.34
COL7A1Q02388 AC091435.1-201ENST00000505442 584 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC0.43□□□□□ -2.34
COL7A1Q02388 AC103851.1-201ENST00000506833 274 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC0.43□□□□□ -2.34
COL7A1Q02388 AP000654.2-201ENST00000605633 586 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 Pinc.1-201ENST00000616452 154 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 AC006213.5-201ENST00000619673 288 ntBASIC0.43□□□□□ -2.34
COL7A1Q02388 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC0.43□□□□□ -2.34
COL7A1Q02388 SNORA8.3-201ENST00000384679 139 ntBASIC0.42□□□□□ -2.34
COL7A1Q02388 RN7SKP158-201ENST00000410453 326 ntBASIC0.42□□□□□ -2.34
COL7A1Q02388 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC0.42□□□□□ -2.34
COL7A1Q02388 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC0.42□□□□□ -2.34
COL7A1Q02388 RPL21P66-201ENST00000426566 466 ntBASIC0.42□□□□□ -2.34
COL7A1Q02388 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC0.42□□□□□ -2.34
COL7A1Q02388 RNF2P1-201ENST00000442955 1010 ntBASIC0.42□□□□□ -2.34
COL7A1Q02388 RPL39P29-201ENST00000447779 157 ntBASIC0.42□□□□□ -2.34
COL7A1Q02388 AL513343.1-201ENST00000451818 792 ntBASIC0.42□□□□□ -2.34
COL7A1Q02388 AC087884.1-201ENST00000469738 328 ntBASIC0.42□□□□□ -2.34
COL7A1Q02388 MGST1-215ENST00000540056 546 ntTSL 3 BASIC0.42□□□□□ -2.34
COL7A1Q02388 AC023932.2-201ENST00000603176 175 ntBASIC0.42□□□□□ -2.34
COL7A1Q02388 AL713998.2-201ENST00000604538 1198 ntBASIC0.42□□□□□ -2.34
COL7A1Q02388 AC106791.2-201ENST00000604680 391 ntBASIC0.42□□□□□ -2.34
COL7A1Q02388 AP001485.1-201ENST00000604799 199 ntBASIC0.42□□□□□ -2.34
COL7A1Q02388 SNORA16B-201ENST00000364674 135 ntBASIC0.42□□□□□ -2.34
COL7A1Q02388 RNU6-700P-201ENST00000391043 107 ntBASIC0.42□□□□□ -2.34
COL7A1Q02388 RNA5SP63-201ENST00000391225 112 ntBASIC0.42□□□□□ -2.34
COL7A1Q02388 LINC01953-201ENST00000426870 717 ntTSL 5 BASIC0.42□□□□□ -2.34
COL7A1Q02388 LAMTOR3P1-201ENST00000428620 370 ntBASIC0.42□□□□□ -2.34
COL7A1Q02388 AC097499.1-201ENST00000444277 208 ntBASIC0.42□□□□□ -2.34
COL7A1Q02388 AC010099.1-201ENST00000455434 375 ntBASIC0.42□□□□□ -2.34
COL7A1Q02388 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC0.42□□□□□ -2.34
COL7A1Q02388 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC0.42□□□□□ -2.34
COL7A1Q02388 AC007834.2-201ENST00000536310 343 ntBASIC0.42□□□□□ -2.34
COL7A1Q02388 LINC00557-201ENST00000563184 1279 ntBASIC0.42□□□□□ -2.34
COL7A1Q02388 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC0.42□□□□□ -2.34
COL7A1Q02388 ELOCP5-201ENST00000604924 333 ntBASIC0.42□□□□□ -2.34
COL7A1Q02388 AC096586.2-201ENST00000610260 441 ntBASIC0.42□□□□□ -2.34
COL7A1Q02388 AL627230.6-201ENST00000611129 280 ntBASIC0.42□□□□□ -2.34
COL7A1Q02388 AL138880.2-201ENST00000616214 239 ntBASIC0.42□□□□□ -2.34
COL7A1Q02388 MIR5087-201ENST00000635826 76 ntBASIC0.42□□□□□ -2.34
COL7A1Q02388 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC0.42□□□□□ -2.34
COL7A1Q02388 SNORA22-201ENST00000383907 134 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 SNORA22C-201ENST00000384614 134 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 RNU6-1064P-201ENST00000410626 104 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 RPL21P32-201ENST00000419877 477 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC0.41□□□□□ -2.34
COL7A1Q02388 TRAPPC13P1-201ENST00000435991 1062 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC0.41□□□□□ -2.34
COL7A1Q02388 RPL21P103-201ENST00000479921 488 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC0.41□□□□□ -2.34
COL7A1Q02388 AC005741.1-201ENST00000511094 432 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC0.41□□□□□ -2.34
COL7A1Q02388 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC0.41□□□□□ -2.34
COL7A1Q02388 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC0.41□□□□□ -2.34
COL7A1Q02388 AC034236.3-201ENST00000605999 461 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 AC019131.2-201ENST00000609071 870 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC0.41□□□□□ -2.34
COL7A1Q02388 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC0.41□□□□□ -2.34
COL7A1Q02388 MIR676-201ENST00000390702 67 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 RNU6-193P-201ENST00000410977 107 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 AC098592.2-201ENST00000413158 265 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 TRAPPC2P4-201ENST00000421750 331 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 AC092628.1-201ENST00000436250 252 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.41□□□□□ -2.34
COL7A1Q02388 MTATP6P7-201ENST00000453315 681 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 HMGN2P9-201ENST00000476875 229 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 RPL30P14-201ENST00000482744 348 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 MTATP6P22-201ENST00000507369 598 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.41□□□□□ -2.34
COL7A1Q02388 AC103710.4-201ENST00000609301 899 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 AP003072.4-201ENST00000624580 310 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 MIR4496-201ENST00000635896 61 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC0.41□□□□□ -2.34
COL7A1Q02388 MIR147B-201ENST00000390185 80 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 RNA5SP450-201ENST00000411206 102 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 AC096649.2-201ENST00000416186 393 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC0.41□□□□□ -2.34
COL7A1Q02388 MTCYBP29-201ENST00000436327 1006 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 AC073614.1-201ENST00000438690 650 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC0.41□□□□□ -2.34
COL7A1Q02388 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC0.41□□□□□ -2.34
COL7A1Q02388 AP003327.1-201ENST00000529684 127 ntBASIC0.41□□□□□ -2.34
COL7A1Q02388 RRN3P3-201ENST00000549207 578 ntBASIC0.41□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 121.8 ms