Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 snoU109.2-201ENST00000459316 135 ntBASIC4.24□□□□□ -1.73
RNF4P78317 AC010469.1-201ENST00000463864 576 ntBASIC4.24□□□□□ -1.73
RNF4P78317 AC006463.2-201ENST00000473326 348 ntBASIC4.24□□□□□ -1.73
RNF4P78317 RN7SL459P-201ENST00000481078 302 ntBASIC4.24□□□□□ -1.73
RNF4P78317 OR5D17P-201ENST00000531492 978 ntBASIC4.24□□□□□ -1.73
RNF4P78317 SARNP-203ENST00000552080 726 ntTSL 2 BASIC4.24□□□□□ -1.73
RNF4P78317 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.24□□□□□ -1.73
RNF4P78317 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.24□□□□□ -1.73
RNF4P78317 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.24□□□□□ -1.73
RNF4P78317 AC015912.2-201ENST00000571053 181 ntBASIC4.24□□□□□ -1.73
RNF4P78317 MIR5696-201ENST00000578474 85 ntBASIC4.24□□□□□ -1.73
RNF4P78317 MIR3128-201ENST00000581957 66 ntBASIC4.24□□□□□ -1.73
RNF4P78317 SRGNP1-201ENST00000603392 451 ntBASIC4.24□□□□□ -1.73
RNF4P78317 AC008745.1-201ENST00000604064 271 ntBASIC4.24□□□□□ -1.73
RNF4P78317 AC004805.2-201ENST00000605382 482 ntBASIC4.24□□□□□ -1.73
RNF4P78317 AC130454.1-201ENST00000622948 401 ntBASIC4.24□□□□□ -1.73
RNF4P78317 AC090617.7-201ENST00000623952 126 ntBASIC4.24□□□□□ -1.73
RNF4P78317 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
RNF4P78317 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.24□□□□□ -1.73
RNF4P78317 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.24□□□□□ -1.73
RNF4P78317 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
RNF4P78317 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
RNF4P78317 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
RNF4P78317 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
RNF4P78317 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
RNF4P78317 AC068254.2-201ENST00000623938 3577 ntBASIC4.23□□□□□ -1.73
RNF4P78317 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
RNF4P78317 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
RNF4P78317 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
RNF4P78317 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
RNF4P78317 SNORD50.1-201ENST00000362987 71 ntBASIC4.23□□□□□ -1.73
RNF4P78317 Y_RNA.552-201ENST00000384665 112 ntBASIC4.23□□□□□ -1.73
RNF4P78317 MIR129-1-201ENST00000384972 72 ntBASIC4.23□□□□□ -1.73
RNF4P78317 MIR1290-201ENST00000408735 78 ntBASIC4.23□□□□□ -1.73
RNF4P78317 Y_RNA.592-201ENST00000410274 109 ntBASIC4.23□□□□□ -1.73
RNF4P78317 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.23□□□□□ -1.73
RNF4P78317 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC4.23□□□□□ -1.73
RNF4P78317 RPS26P2-201ENST00000440331 348 ntBASIC4.23□□□□□ -1.73
RNF4P78317 RPL23AP93-201ENST00000440847 484 ntBASIC4.23□□□□□ -1.73
RNF4P78317 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.23□□□□□ -1.73
RNF4P78317 AL078601.1-201ENST00000444542 271 ntBASIC4.23□□□□□ -1.73
RNF4P78317 HMGN2P21-201ENST00000447764 270 ntBASIC4.23□□□□□ -1.73
RNF4P78317 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC4.23□□□□□ -1.73
RNF4P78317 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
RNF4P78317 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.23□□□□□ -1.73
RNF4P78317 AC092798.1-201ENST00000458542 409 ntBASIC4.23□□□□□ -1.73
RNF4P78317 snoU13.1-201ENST00000459157 104 ntBASIC4.23□□□□□ -1.73
RNF4P78317 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC4.23□□□□□ -1.73
RNF4P78317 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC4.23□□□□□ -1.73
RNF4P78317 RNU6-1073P-201ENST00000517182 106 ntBASIC4.23□□□□□ -1.73
RNF4P78317 RNA5SP291-201ENST00000517222 105 ntBASIC4.23□□□□□ -1.73
RNF4P78317 AC109329.1-201ENST00000518744 317 ntBASIC4.23□□□□□ -1.73
RNF4P78317 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.23□□□□□ -1.73
RNF4P78317 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC4.23□□□□□ -1.73
RNF4P78317 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.23□□□□□ -1.73
RNF4P78317 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC4.23□□□□□ -1.73
RNF4P78317 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.23□□□□□ -1.73
RNF4P78317 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC4.23□□□□□ -1.73
RNF4P78317 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.23□□□□□ -1.73
RNF4P78317 AL109918.3-201ENST00000603072 338 ntBASIC4.23□□□□□ -1.73
RNF4P78317 AC025946.2-201ENST00000603398 234 ntBASIC4.23□□□□□ -1.73
RNF4P78317 AC096772.1-201ENST00000609146 564 ntBASIC4.23□□□□□ -1.73
RNF4P78317 AC009318.2-201ENST00000610917 651 ntBASIC4.23□□□□□ -1.73
RNF4P78317 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.23□□□□□ -1.73
RNF4P78317 OR56B2P-202ENST00000641377 2453 ntBASIC4.23□□□□□ -1.73
RNF4P78317 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.23□□□□□ -1.73
RNF4P78317 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
RNF4P78317 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.22□□□□□ -1.73
RNF4P78317 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.22□□□□□ -1.73
RNF4P78317 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
RNF4P78317 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
RNF4P78317 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
RNF4P78317 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.22□□□□□ -1.73
RNF4P78317 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.22□□□□□ -1.73
RNF4P78317 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
RNF4P78317 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
RNF4P78317 AC008725.1-201ENST00000605123 2263 ntBASIC4.22□□□□□ -1.73
RNF4P78317 OR56A5-201ENST00000340110 738 ntBASIC4.22□□□□□ -1.73
RNF4P78317 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.22□□□□□ -1.73
RNF4P78317 MIR34A-201ENST00000385130 110 ntBASIC4.22□□□□□ -1.73
RNF4P78317 RNA5SP239-201ENST00000410218 129 ntBASIC4.22□□□□□ -1.73
RNF4P78317 MTCO3P19-201ENST00000415864 321 ntBASIC4.22□□□□□ -1.73
RNF4P78317 RPEP3-201ENST00000425462 676 ntBASIC4.22□□□□□ -1.73
RNF4P78317 RPS12P10-201ENST00000427031 377 ntBASIC4.22□□□□□ -1.73
RNF4P78317 DNAJC19P7-201ENST00000428811 344 ntBASIC4.22□□□□□ -1.73
RNF4P78317 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC4.22□□□□□ -1.73
RNF4P78317 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC4.22□□□□□ -1.73
RNF4P78317 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.22□□□□□ -1.73
RNF4P78317 SNORA31.8-201ENST00000516327 108 ntBASIC4.22□□□□□ -1.73
RNF4P78317 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC4.22□□□□□ -1.73
RNF4P78317 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
RNF4P78317 AC007458.1-201ENST00000542812 373 ntBASIC4.22□□□□□ -1.73
RNF4P78317 AC053481.4-201ENST00000583164 216 ntBASIC4.22□□□□□ -1.73
RNF4P78317 MIR4715-201ENST00000584117 79 ntBASIC4.22□□□□□ -1.73
RNF4P78317 AL645944.1-201ENST00000603857 493 ntBASIC4.22□□□□□ -1.73
RNF4P78317 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC4.22□□□□□ -1.73
RNF4P78317 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
RNF4P78317 AP005019.3-201ENST00000620418 560 ntBASIC4.22□□□□□ -1.73
RNF4P78317 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.22□□□□□ -1.73
RNF4P78317 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 137.3 ms