Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
LIG3P49916 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
LIG3P49916 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
LIG3P49916 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.6□□□□□ -1.67
LIG3P49916 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.6□□□□□ -1.67
LIG3P49916 AC008669.1-201ENST00000565823 2178 ntBASIC4.6□□□□□ -1.67
LIG3P49916 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
LIG3P49916 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
LIG3P49916 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.59□□□□□ -1.67
LIG3P49916 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
LIG3P49916 RPL9P7-201ENST00000330965 580 ntBASIC4.59□□□□□ -1.67
LIG3P49916 RNU6-1317P-201ENST00000364582 104 ntBASIC4.59□□□□□ -1.67
LIG3P49916 AL591034.2-201ENST00000402839 359 ntBASIC4.59□□□□□ -1.67
LIG3P49916 SNORD56-201ENST00000413522 71 ntBASIC4.59□□□□□ -1.67
LIG3P49916 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.59□□□□□ -1.67
LIG3P49916 PGBD4P6-201ENST00000421501 610 ntBASIC4.59□□□□□ -1.67
LIG3P49916 AL513043.1-201ENST00000439124 535 ntBASIC4.59□□□□□ -1.67
LIG3P49916 PIGFP3-201ENST00000441918 722 ntBASIC4.59□□□□□ -1.67
LIG3P49916 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.59□□□□□ -1.67
LIG3P49916 RPL9P9-202ENST00000466501 579 ntBASIC4.59□□□□□ -1.67
LIG3P49916 HMGN2P13-201ENST00000476476 274 ntBASIC4.59□□□□□ -1.67
LIG3P49916 AC010655.3-201ENST00000478818 450 ntBASIC4.59□□□□□ -1.67
LIG3P49916 AC146944.2-203ENST00000502493 354 ntBASIC4.59□□□□□ -1.67
LIG3P49916 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.59□□□□□ -1.67
LIG3P49916 PARP4P3-201ENST00000510265 317 ntBASIC4.59□□□□□ -1.67
LIG3P49916 AC139495.1-202ENST00000513164 354 ntBASIC4.59□□□□□ -1.67
LIG3P49916 RNU6-1073P-201ENST00000517182 106 ntBASIC4.59□□□□□ -1.67
LIG3P49916 AC025755.1-201ENST00000521306 278 ntBASIC4.59□□□□□ -1.67
LIG3P49916 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.59□□□□□ -1.67
LIG3P49916 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.59□□□□□ -1.67
LIG3P49916 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC4.59□□□□□ -1.67
LIG3P49916 MIR5096-201ENST00000583713 70 ntBASIC4.59□□□□□ -1.67
LIG3P49916 AC091178.1-203ENST00000584586 279 ntBASIC4.59□□□□□ -1.67
LIG3P49916 AC020914.4-201ENST00000597690 277 ntBASIC4.59□□□□□ -1.67
LIG3P49916 AL645944.1-201ENST00000603857 493 ntBASIC4.59□□□□□ -1.67
LIG3P49916 AC009314.1-201ENST00000603871 304 ntBASIC4.59□□□□□ -1.67
LIG3P49916 Z98751.3-201ENST00000604447 521 ntBASIC4.59□□□□□ -1.67
LIG3P49916 AC004852.3-201ENST00000614131 326 ntBASIC4.59□□□□□ -1.67
LIG3P49916 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.59□□□□□ -1.67
LIG3P49916 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC4.59□□□□□ -1.67
LIG3P49916 NAA50-211ENST00000630058 177 ntTSL 5 BASIC4.59□□□□□ -1.67
LIG3P49916 MIR4272-201ENST00000635924 64 ntBASIC4.59□□□□□ -1.67
LIG3P49916 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
LIG3P49916 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.59□□□□□ -1.68
LIG3P49916 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
LIG3P49916 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
LIG3P49916 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
LIG3P49916 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
LIG3P49916 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
LIG3P49916 Y_RNA.188-201ENST00000363952 111 ntBASIC4.58□□□□□ -1.68
LIG3P49916 U8.8-201ENST00000365399 135 ntBASIC4.58□□□□□ -1.68
LIG3P49916 RNU6-26P-201ENST00000383985 107 ntBASIC4.58□□□□□ -1.68
LIG3P49916 RNU1-44P-201ENST00000384453 163 ntBASIC4.58□□□□□ -1.68
LIG3P49916 MIR141-201ENST00000384975 95 ntBASIC4.58□□□□□ -1.68
LIG3P49916 MIR10A-201ENST00000385043 110 ntBASIC4.58□□□□□ -1.68
LIG3P49916 NUP35P1-201ENST00000422734 947 ntBASIC4.58□□□□□ -1.68
LIG3P49916 CBX3P6-201ENST00000430257 527 ntBASIC4.58□□□□□ -1.68
LIG3P49916 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
LIG3P49916 CECR9-201ENST00000453421 199 ntBASIC4.58□□□□□ -1.68
LIG3P49916 ISCUP1-201ENST00000454451 448 ntBASIC4.58□□□□□ -1.68
LIG3P49916 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
LIG3P49916 RN7SL481P-201ENST00000477764 299 ntBASIC4.58□□□□□ -1.68
LIG3P49916 KC877373.1-201ENST00000479066 408 ntBASIC4.58□□□□□ -1.68
LIG3P49916 FO393415.2-201ENST00000480085 343 ntBASIC4.58□□□□□ -1.68
LIG3P49916 AC114801.2-201ENST00000503825 781 ntBASIC4.58□□□□□ -1.68
LIG3P49916 SNORA40.14-201ENST00000516543 86 ntBASIC4.58□□□□□ -1.68
LIG3P49916 Y_RNA.687-201ENST00000516558 91 ntBASIC4.58□□□□□ -1.68
LIG3P49916 AC053481.4-201ENST00000583164 216 ntBASIC4.58□□□□□ -1.68
LIG3P49916 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC4.58□□□□□ -1.68
LIG3P49916 AC103858.2-201ENST00000621471 543 ntBASIC4.58□□□□□ -1.68
LIG3P49916 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.58□□□□□ -1.68
LIG3P49916 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.58□□□□□ -1.68
LIG3P49916 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
LIG3P49916 OR56B2P-202ENST00000641377 2453 ntBASIC4.58□□□□□ -1.68
LIG3P49916 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
LIG3P49916 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
LIG3P49916 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.58□□□□□ -1.68
LIG3P49916 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC4.57□□□□□ -1.68
LIG3P49916 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
LIG3P49916 AL359693.1-201ENST00000614959 2407 ntBASIC4.57□□□□□ -1.68
LIG3P49916 AC008568.2-201ENST00000623862 2313 ntBASIC4.57□□□□□ -1.68
LIG3P49916 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.57□□□□□ -1.68
LIG3P49916 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
LIG3P49916 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
LIG3P49916 RNU6-1318P-201ENST00000365389 103 ntBASIC4.57□□□□□ -1.68
LIG3P49916 RNU6-827P-201ENST00000365553 106 ntBASIC4.57□□□□□ -1.68
LIG3P49916 SNORD14.1-201ENST00000365609 90 ntBASIC4.57□□□□□ -1.68
LIG3P49916 RNU6-1279P-201ENST00000383917 103 ntBASIC4.57□□□□□ -1.68
LIG3P49916 MIR659-201ENST00000384963 97 ntBASIC4.57□□□□□ -1.68
LIG3P49916 MIR625-201ENST00000385047 85 ntBASIC4.57□□□□□ -1.68
LIG3P49916 MIR34A-201ENST00000385130 110 ntBASIC4.57□□□□□ -1.68
LIG3P49916 RNU6-1109P-201ENST00000391187 107 ntBASIC4.57□□□□□ -1.68
LIG3P49916 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
LIG3P49916 AC092573.2-201ENST00000434546 243 ntBASIC4.57□□□□□ -1.68
LIG3P49916 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.57□□□□□ -1.68
LIG3P49916 RPL23AP93-201ENST00000440847 484 ntBASIC4.57□□□□□ -1.68
LIG3P49916 RNA5SP497-201ENST00000516081 97 ntBASIC4.57□□□□□ -1.68
LIG3P49916 SNORA31.19-201ENST00000517079 126 ntBASIC4.57□□□□□ -1.68
LIG3P49916 RNU6-794P-201ENST00000517261 64 ntBASIC4.57□□□□□ -1.68
LIG3P49916 AP000889.1-201ENST00000530968 660 ntBASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 126.4 ms