Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC3.55□□□□□ -1.84
CIITAP33076 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.55□□□□□ -1.84
CIITAP33076 RNU7-63P-201ENST00000459054 62 ntBASIC3.55□□□□□ -1.84
CIITAP33076 MRPS17P3-201ENST00000465453 385 ntBASIC3.55□□□□□ -1.84
CIITAP33076 AC091951.2-201ENST00000500762 203 ntBASIC3.55□□□□□ -1.84
CIITAP33076 Y_RNA.702-201ENST00000516843 96 ntBASIC3.55□□□□□ -1.84
CIITAP33076 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC3.55□□□□□ -1.84
CIITAP33076 HMGN1P28-201ENST00000521340 364 ntBASIC3.55□□□□□ -1.84
CIITAP33076 SUB1P1-201ENST00000524415 382 ntBASIC3.55□□□□□ -1.84
CIITAP33076 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.55□□□□□ -1.84
CIITAP33076 ADI1P3-201ENST00000549509 470 ntBASIC3.55□□□□□ -1.84
CIITAP33076 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.55□□□□□ -1.84
CIITAP33076 MIR3200-201ENST00000580767 85 ntBASIC3.55□□□□□ -1.84
CIITAP33076 AC009994.1-201ENST00000606889 253 ntBASIC3.55□□□□□ -1.84
CIITAP33076 AC006504.8-201ENST00000621046 635 ntBASIC3.55□□□□□ -1.84
CIITAP33076 AC010338.1-201ENST00000621823 717 ntBASIC3.55□□□□□ -1.84
CIITAP33076 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.55□□□□□ -1.84
CIITAP33076 MIR7153-201ENST00000637758 57 ntBASIC3.55□□□□□ -1.84
CIITAP33076 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.55□□□□□ -1.84
CIITAP33076 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.55□□□□□ -1.84
CIITAP33076 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CIITAP33076 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.54□□□□□ -1.84
CIITAP33076 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
CIITAP33076 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.54□□□□□ -1.84
CIITAP33076 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CIITAP33076 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.54□□□□□ -1.84
CIITAP33076 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC3.54□□□□□ -1.84
CIITAP33076 RNU6-1284P-201ENST00000363701 100 ntBASIC3.54□□□□□ -1.84
CIITAP33076 RNU6-960P-201ENST00000364056 120 ntBASIC3.54□□□□□ -1.84
CIITAP33076 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.54□□□□□ -1.84
CIITAP33076 FAT1P1-201ENST00000406588 507 ntBASIC3.54□□□□□ -1.84
CIITAP33076 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.54□□□□□ -1.84
CIITAP33076 MTCYBP8-201ENST00000422855 651 ntBASIC3.54□□□□□ -1.84
CIITAP33076 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC3.54□□□□□ -1.84
CIITAP33076 RPL36AP53-201ENST00000432891 316 ntBASIC3.54□□□□□ -1.84
CIITAP33076 AC024082.2-201ENST00000434771 238 ntBASIC3.54□□□□□ -1.84
CIITAP33076 CALM1P1-201ENST00000442082 433 ntBASIC3.54□□□□□ -1.84
CIITAP33076 RPS12P18-201ENST00000442381 270 ntBASIC3.54□□□□□ -1.84
CIITAP33076 AC008481.1-201ENST00000463278 396 ntBASIC3.54□□□□□ -1.84
CIITAP33076 GMFBP1-201ENST00000467831 427 ntBASIC3.54□□□□□ -1.84
CIITAP33076 AC006512.1-201ENST00000468816 291 ntBASIC3.54□□□□□ -1.84
CIITAP33076 AL163973.1-201ENST00000484753 577 ntBASIC3.54□□□□□ -1.84
CIITAP33076 AC116562.3-201ENST00000506136 177 ntBASIC3.54□□□□□ -1.84
CIITAP33076 AC092436.1-201ENST00000506450 503 ntBASIC3.54□□□□□ -1.84
CIITAP33076 AC018710.1-201ENST00000506509 158 ntBASIC3.54□□□□□ -1.84
CIITAP33076 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.54□□□□□ -1.84
CIITAP33076 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.54□□□□□ -1.84
CIITAP33076 RN7SKP219-201ENST00000516825 296 ntBASIC3.54□□□□□ -1.84
CIITAP33076 AC093331.1-201ENST00000521474 169 ntBASIC3.54□□□□□ -1.84
CIITAP33076 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CIITAP33076 AC068587.5-201ENST00000528506 175 ntBASIC3.54□□□□□ -1.84
CIITAP33076 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.54□□□□□ -1.84
CIITAP33076 AL163153.1-201ENST00000554223 283 ntBASIC3.54□□□□□ -1.84
CIITAP33076 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC3.54□□□□□ -1.84
CIITAP33076 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.54□□□□□ -1.84
CIITAP33076 AL160281.1-201ENST00000605307 311 ntBASIC3.54□□□□□ -1.84
CIITAP33076 AC025253.1-201ENST00000613623 543 ntBASIC3.54□□□□□ -1.84
CIITAP33076 SNHG22-203ENST00000617833 660 ntBASIC3.54□□□□□ -1.84
CIITAP33076 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
CIITAP33076 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC3.54□□□□□ -1.84
CIITAP33076 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CIITAP33076 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CIITAP33076 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
CIITAP33076 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
CIITAP33076 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.54□□□□□ -1.84
CIITAP33076 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CIITAP33076 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.53□□□□□ -1.84
CIITAP33076 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.53□□□□□ -1.84
CIITAP33076 AL139276.1-201ENST00000311910 1001 ntBASIC3.53□□□□□ -1.84
CIITAP33076 Y_RNA.160-201ENST00000363677 92 ntBASIC3.53□□□□□ -1.84
CIITAP33076 Y_RNA.279-201ENST00000364763 95 ntBASIC3.53□□□□□ -1.84
CIITAP33076 SNORA23-201ENST00000365128 182 ntBASIC3.53□□□□□ -1.84
CIITAP33076 RNU6-996P-201ENST00000365438 107 ntBASIC3.53□□□□□ -1.84
CIITAP33076 SMIM11P1-201ENST00000369586 178 ntBASIC3.53□□□□□ -1.84
CIITAP33076 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CIITAP33076 SNORA54-201ENST00000384281 123 ntBASIC3.53□□□□□ -1.84
CIITAP33076 SNORA1.3-201ENST00000384676 136 ntBASIC3.53□□□□□ -1.84
CIITAP33076 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC3.53□□□□□ -1.84
CIITAP33076 TMEM167AP1-201ENST00000423409 219 ntBASIC3.53□□□□□ -1.84
CIITAP33076 MTATP6P4-201ENST00000427725 675 ntBASIC3.53□□□□□ -1.84
CIITAP33076 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.53□□□□□ -1.84
CIITAP33076 AL356867.1-201ENST00000429623 299 ntBASIC3.53□□□□□ -1.84
CIITAP33076 USP12PX-201ENST00000432383 1057 ntBASIC3.53□□□□□ -1.84
CIITAP33076 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC3.53□□□□□ -1.84
CIITAP33076 USP9YP8-201ENST00000441913 500 ntBASIC3.53□□□□□ -1.84
CIITAP33076 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC3.53□□□□□ -1.84
CIITAP33076 AL118520.1-201ENST00000450770 291 ntBASIC3.53□□□□□ -1.84
CIITAP33076 RPS20P20-201ENST00000460498 340 ntBASIC3.53□□□□□ -1.84
CIITAP33076 AC012181.1-201ENST00000479895 423 ntBASIC3.53□□□□□ -1.84
CIITAP33076 RPS4XP22-201ENST00000480755 780 ntBASIC3.53□□□□□ -1.84
CIITAP33076 HMGN1P12-201ENST00000499125 195 ntBASIC3.53□□□□□ -1.84
CIITAP33076 AC008628.2-201ENST00000502605 298 ntBASIC3.53□□□□□ -1.84
CIITAP33076 NAF1-205ENST00000509434 385 ntTSL 3 BASIC3.53□□□□□ -1.84
CIITAP33076 AC008549.1-201ENST00000512900 643 ntBASIC3.53□□□□□ -1.84
CIITAP33076 SCARNA13-201ENST00000516672 275 ntBASIC3.53□□□□□ -1.84
CIITAP33076 RNU6-1092P-201ENST00000516955 87 ntBASIC3.53□□□□□ -1.84
CIITAP33076 PSMA2P1-201ENST00000526365 646 ntBASIC3.53□□□□□ -1.84
CIITAP33076 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.53□□□□□ -1.84
CIITAP33076 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.53□□□□□ -1.84
CIITAP33076 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 131.5 ms