Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC009237.7-201ENST00000447357 229 ntBASIC4.76□□□□□ -1.65
MSX1P28360 BTF3L4P4-201ENST00000506381 449 ntBASIC4.76□□□□□ -1.65
MSX1P28360 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC4.76□□□□□ -1.65
MSX1P28360 RNU6-1256P-201ENST00000516539 103 ntBASIC4.76□□□□□ -1.65
MSX1P28360 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC4.76□□□□□ -1.65
MSX1P28360 AL391261.3-201ENST00000557194 520 ntBASIC4.76□□□□□ -1.65
MSX1P28360 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC4.76□□□□□ -1.65
MSX1P28360 MIR3936-201ENST00000584304 110 ntBASIC4.76□□□□□ -1.65
MSX1P28360 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
MSX1P28360 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC4.76□□□□□ -1.65
MSX1P28360 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC4.76□□□□□ -1.65
MSX1P28360 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.76□□□□□ -1.65
MSX1P28360 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.76□□□□□ -1.65
MSX1P28360 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
MSX1P28360 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.76□□□□□ -1.65
MSX1P28360 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.76□□□□□ -1.65
MSX1P28360 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.76□□□□□ -1.65
MSX1P28360 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.76□□□□□ -1.65
MSX1P28360 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC4.76□□□□□ -1.65
MSX1P28360 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
MSX1P28360 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
MSX1P28360 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
MSX1P28360 AL034549.2-201ENST00000618285 3373 ntBASIC4.76□□□□□ -1.65
MSX1P28360 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC4.76□□□□□ -1.65
MSX1P28360 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
MSX1P28360 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
MSX1P28360 AL365440.1-201ENST00000436135 2167 ntBASIC4.75□□□□□ -1.65
MSX1P28360 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
MSX1P28360 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
MSX1P28360 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
MSX1P28360 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
MSX1P28360 AP001029.2-203ENST00000589795 4910 ntBASIC4.75□□□□□ -1.65
MSX1P28360 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
MSX1P28360 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC4.75□□□□□ -1.65
MSX1P28360 RNU6-527P-201ENST00000363425 104 ntBASIC4.75□□□□□ -1.65
MSX1P28360 Y_RNA.273-201ENST00000364703 102 ntBASIC4.75□□□□□ -1.65
MSX1P28360 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.75□□□□□ -1.65
MSX1P28360 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
MSX1P28360 RNU6-1145P-201ENST00000384246 107 ntBASIC4.75□□□□□ -1.65
MSX1P28360 MIR186-201ENST00000384988 86 ntBASIC4.75□□□□□ -1.65
MSX1P28360 MIR329-1-201ENST00000385028 80 ntBASIC4.75□□□□□ -1.65
MSX1P28360 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC4.75□□□□□ -1.65
MSX1P28360 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.75□□□□□ -1.65
MSX1P28360 WARS2P1-201ENST00000429678 537 ntBASIC4.75□□□□□ -1.65
MSX1P28360 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC4.75□□□□□ -1.65
MSX1P28360 AC009963.2-201ENST00000453431 138 ntBASIC4.75□□□□□ -1.65
MSX1P28360 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC4.75□□□□□ -1.65
MSX1P28360 RPS29P22-201ENST00000472363 168 ntBASIC4.75□□□□□ -1.65
MSX1P28360 RPL31P13-201ENST00000484151 370 ntBASIC4.75□□□□□ -1.65
MSX1P28360 SRI-210ENST00000490437 570 ntTSL 2 BASIC4.75□□□□□ -1.65
MSX1P28360 MLLT10P2-201ENST00000506434 249 ntBASIC4.75□□□□□ -1.65
MSX1P28360 RNU6-426P-201ENST00000516464 97 ntBASIC4.75□□□□□ -1.65
MSX1P28360 RNA5SP165-201ENST00000517142 115 ntBASIC4.75□□□□□ -1.65
MSX1P28360 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC4.75□□□□□ -1.65
MSX1P28360 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC4.75□□□□□ -1.65
MSX1P28360 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.75□□□□□ -1.65
MSX1P28360 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.75□□□□□ -1.65
MSX1P28360 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC4.75□□□□□ -1.65
MSX1P28360 MIR5695-201ENST00000579717 85 ntBASIC4.75□□□□□ -1.65
MSX1P28360 AC011447.4-201ENST00000587562 111 ntBASIC4.75□□□□□ -1.65
MSX1P28360 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.75□□□□□ -1.65
MSX1P28360 AC100821.1-201ENST00000523153 2479 ntBASIC4.75□□□□□ -1.65
MSX1P28360 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
MSX1P28360 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
MSX1P28360 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
MSX1P28360 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
MSX1P28360 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
MSX1P28360 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.75□□□□□ -1.65
MSX1P28360 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
MSX1P28360 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
MSX1P28360 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
MSX1P28360 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
MSX1P28360 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.74□□□□□ -1.65
MSX1P28360 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
MSX1P28360 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
MSX1P28360 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
MSX1P28360 AC092376.2-201ENST00000622621 4116 ntBASIC4.74□□□□□ -1.65
MSX1P28360 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
MSX1P28360 RNU6-137P-201ENST00000363680 108 ntBASIC4.74□□□□□ -1.65
MSX1P28360 RNU6-741P-201ENST00000383889 107 ntBASIC4.74□□□□□ -1.65
MSX1P28360 RNU6-211P-201ENST00000384047 107 ntBASIC4.74□□□□□ -1.65
MSX1P28360 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
MSX1P28360 SNORA40.19-201ENST00000390846 128 ntBASIC4.74□□□□□ -1.65
MSX1P28360 RNU6-257P-201ENST00000410238 98 ntBASIC4.74□□□□□ -1.65
MSX1P28360 RNA5SP44-201ENST00000410446 133 ntBASIC4.74□□□□□ -1.65
MSX1P28360 RNU6-1001P-201ENST00000411265 100 ntBASIC4.74□□□□□ -1.65
MSX1P28360 AC098614.2-201ENST00000426040 255 ntBASIC4.74□□□□□ -1.65
MSX1P28360 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC4.74□□□□□ -1.65
MSX1P28360 AC083982.1-201ENST00000485679 344 ntBASIC4.74□□□□□ -1.65
MSX1P28360 AC010409.1-201ENST00000487382 476 ntBASIC4.74□□□□□ -1.65
MSX1P28360 RN7SL346P-201ENST00000491561 294 ntBASIC4.74□□□□□ -1.65
MSX1P28360 AC005840.1-201ENST00000498412 377 ntBASIC4.74□□□□□ -1.65
MSX1P28360 HMGB3P3-201ENST00000510526 400 ntBASIC4.74□□□□□ -1.65
MSX1P28360 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.74□□□□□ -1.65
MSX1P28360 SNORD116-25-201ENST00000516517 92 ntBASIC4.74□□□□□ -1.65
MSX1P28360 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.74□□□□□ -1.65
MSX1P28360 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.74□□□□□ -1.65
MSX1P28360 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.74□□□□□ -1.65
MSX1P28360 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC4.74□□□□□ -1.65
MSX1P28360 MIR4472-2-201ENST00000582069 67 ntBASIC4.74□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms