Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AL160275.3-201ENST00000423876 471 ntBASIC3.32□□□□□ -1.88
HOXC11O43248 SKA2P1-201ENST00000425592 390 ntBASIC3.32□□□□□ -1.88
HOXC11O43248 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXC11O43248 AL158071.1-201ENST00000430315 461 ntBASIC3.32□□□□□ -1.88
HOXC11O43248 AC125238.1-201ENST00000448842 249 ntBASIC3.32□□□□□ -1.88
HOXC11O43248 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXC11O43248 ELOCP23-201ENST00000452014 332 ntBASIC3.32□□□□□ -1.88
HOXC11O43248 AC006512.1-201ENST00000468816 291 ntBASIC3.32□□□□□ -1.88
HOXC11O43248 RPS27AP10-201ENST00000496103 208 ntBASIC3.32□□□□□ -1.88
HOXC11O43248 AC026801.1-201ENST00000497178 464 ntBASIC3.32□□□□□ -1.88
HOXC11O43248 AC107401.1-201ENST00000503426 685 ntBASIC3.32□□□□□ -1.88
HOXC11O43248 RNA5SP503-201ENST00000517047 117 ntBASIC3.32□□□□□ -1.88
HOXC11O43248 RNA5SP380-201ENST00000517190 98 ntBASIC3.32□□□□□ -1.88
HOXC11O43248 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXC11O43248 SUB1P1-201ENST00000524415 382 ntBASIC3.32□□□□□ -1.88
HOXC11O43248 FAM92A1P1-201ENST00000528023 890 ntBASIC3.32□□□□□ -1.88
HOXC11O43248 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXC11O43248 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXC11O43248 TGIF1P1-201ENST00000558095 802 ntBASIC3.32□□□□□ -1.88
HOXC11O43248 AC106782.4-201ENST00000568264 210 ntBASIC3.32□□□□□ -1.88
HOXC11O43248 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.32□□□□□ -1.88
HOXC11O43248 MIR2682-201ENST00000580305 110 ntBASIC3.32□□□□□ -1.88
HOXC11O43248 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXC11O43248 AC008521.1-201ENST00000587471 187 ntBASIC3.32□□□□□ -1.88
HOXC11O43248 AL355877.2-201ENST00000603670 358 ntBASIC3.32□□□□□ -1.88
HOXC11O43248 AC126118.1-201ENST00000607744 628 ntBASIC3.32□□□□□ -1.88
HOXC11O43248 AC135507.2-201ENST00000612443 309 ntBASIC3.32□□□□□ -1.88
HOXC11O43248 SRP54-214ENST00000630962 162 ntTSL 5 BASIC3.32□□□□□ -1.88
HOXC11O43248 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXC11O43248 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HOXC11O43248 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HOXC11O43248 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.32□□□□□ -1.88
HOXC11O43248 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
HOXC11O43248 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXC11O43248 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HOXC11O43248 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXC11O43248 AC004972.1-201ENST00000623934 2209 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 AC099654.7-201ENST00000635788 2127 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 Y_RNA.1-201ENST00000352915 104 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 RNU4-75P-201ENST00000364621 146 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 RNU6-1103P-201ENST00000384150 107 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 SNORA7.4-201ENST00000384249 137 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 Y_RNA.517-201ENST00000384551 106 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 RNU6-606P-201ENST00000384721 111 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 UBE2V1P2-201ENST00000397758 440 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 RNU4-55P-201ENST00000410731 137 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 OR51A5P-201ENST00000415429 942 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 AL356968.1-201ENST00000416622 474 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 BPY2DP-201ENST00000422208 265 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 AL365496.1-201ENST00000426885 215 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 VN1R108P-201ENST00000431580 830 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC3.31□□□□□ -1.88
HOXC11O43248 RPS15AP5-201ENST00000436276 388 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXC11O43248 BRK1P2-201ENST00000442875 223 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 AC003071.1-201ENST00000451219 789 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXC11O43248 TRBV1-201ENST00000476502 284 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 AC021205.2-201ENST00000480069 347 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 RPS27P26-201ENST00000494583 239 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 EIF4EP3-201ENST00000498782 656 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXC11O43248 RNA5SP341-201ENST00000516261 117 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC3.31□□□□□ -1.88
HOXC11O43248 AC245505.1-201ENST00000556398 224 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 AC025281.1-201ENST00000567026 265 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 AC010653.1-201ENST00000571108 881 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 MIR4782-201ENST00000577987 79 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 AL138889.2-201ENST00000603883 242 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 AC013562.2-201ENST00000611632 603 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 AL162274.2-201ENST00000614406 332 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 uc_338.11-201ENST00000619132 160 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 AC018692.3-201ENST00000623929 123 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 AC090617.7-201ENST00000623952 126 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.31□□□□□ -1.88
HOXC11O43248 MIR3199-2-201ENST00000636243 86 ntBASIC3.31□□□□□ -1.88
HOXC11O43248 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXC11O43248 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.31□□□□□ -1.88
HOXC11O43248 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
HOXC11O43248 ELF2P3-201ENST00000445099 1506 ntBASIC3.3□□□□□ -1.88
HOXC11O43248 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXC11O43248 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXC11O43248 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.3□□□□□ -1.88
HOXC11O43248 RNU1-75P-201ENST00000347264 129 ntBASIC3.3□□□□□ -1.88
HOXC11O43248 MIR30E-201ENST00000362104 92 ntBASIC3.3□□□□□ -1.88
HOXC11O43248 MIR422A-201ENST00000362286 90 ntBASIC3.3□□□□□ -1.88
HOXC11O43248 UBA52P6-201ENST00000399822 382 ntBASIC3.3□□□□□ -1.88
HOXC11O43248 AC245291.1-201ENST00000419501 328 ntBASIC3.3□□□□□ -1.88
HOXC11O43248 AC098614.2-201ENST00000426040 255 ntBASIC3.3□□□□□ -1.88
HOXC11O43248 AC007560.1-201ENST00000426912 237 ntBASIC3.3□□□□□ -1.88
HOXC11O43248 SAR1AP4-201ENST00000429225 591 ntBASIC3.3□□□□□ -1.88
HOXC11O43248 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXC11O43248 MTND1P18-201ENST00000448191 573 ntBASIC3.3□□□□□ -1.88
HOXC11O43248 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXC11O43248 RPS29P15-201ENST00000458329 171 ntBASIC3.3□□□□□ -1.88
HOXC11O43248 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXC11O43248 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXC11O43248 SCARNA13-201ENST00000516672 275 ntBASIC3.3□□□□□ -1.88
HOXC11O43248 RNU6-703P-201ENST00000516946 107 ntBASIC3.3□□□□□ -1.88
HOXC11O43248 AC068657.1-201ENST00000520807 306 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms