Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.5□□□□□ -2.01
CLDN3O15551 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
CLDN3O15551 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.49□□□□□ -2.01
CLDN3O15551 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.49□□□□□ -2.01
CLDN3O15551 RNY4P24-201ENST00000362735 96 ntBASIC2.49□□□□□ -2.01
CLDN3O15551 RNU6-301P-201ENST00000384277 107 ntBASIC2.49□□□□□ -2.01
CLDN3O15551 MIR147B-201ENST00000390185 80 ntBASIC2.49□□□□□ -2.01
CLDN3O15551 U8.14-201ENST00000390843 143 ntBASIC2.49□□□□□ -2.01
CLDN3O15551 BTF3P7-201ENST00000407097 488 ntBASIC2.49□□□□□ -2.01
CLDN3O15551 ZNF90P2-204ENST00000419323 1075 ntBASIC2.49□□□□□ -2.01
CLDN3O15551 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.49□□□□□ -2.01
CLDN3O15551 AC018634.1-201ENST00000437554 401 ntBASIC2.49□□□□□ -2.01
CLDN3O15551 MTATP6P7-201ENST00000453315 681 ntBASIC2.49□□□□□ -2.01
CLDN3O15551 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC2.49□□□□□ -2.01
CLDN3O15551 MTCO1P42-201ENST00000457379 726 ntBASIC2.49□□□□□ -2.01
CLDN3O15551 TPT1P8-201ENST00000510120 555 ntBASIC2.49□□□□□ -2.01
CLDN3O15551 SNORA31.3-201ENST00000516029 96 ntBASIC2.49□□□□□ -2.01
CLDN3O15551 RNU6-143P-201ENST00000516942 93 ntBASIC2.49□□□□□ -2.01
CLDN3O15551 SNORD19.2-201ENST00000516978 73 ntBASIC2.49□□□□□ -2.01
CLDN3O15551 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC2.49□□□□□ -2.01
CLDN3O15551 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC2.49□□□□□ -2.01
CLDN3O15551 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.49□□□□□ -2.01
CLDN3O15551 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC2.49□□□□□ -2.01
CLDN3O15551 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC2.49□□□□□ -2.01
CLDN3O15551 AC112187.2-201ENST00000604345 283 ntBASIC2.49□□□□□ -2.01
CLDN3O15551 AC025588.2-201ENST00000604851 466 ntBASIC2.49□□□□□ -2.01
CLDN3O15551 AL021997.1-201ENST00000605757 193 ntBASIC2.49□□□□□ -2.01
CLDN3O15551 AC107214.2-201ENST00000608204 634 ntBASIC2.49□□□□□ -2.01
CLDN3O15551 TUSC7.1-201ENST00000610969 165 ntBASIC2.49□□□□□ -2.01
CLDN3O15551 AC025594.3-201ENST00000613068 790 ntBASIC2.49□□□□□ -2.01
CLDN3O15551 MIR6766-201ENST00000622641 72 ntBASIC2.49□□□□□ -2.01
CLDN3O15551 MIR203B-201ENST00000636080 86 ntBASIC2.49□□□□□ -2.01
CLDN3O15551 U6.99-201ENST00000637524 83 ntBASIC2.49□□□□□ -2.01
CLDN3O15551 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.49□□□□□ -2.01
CLDN3O15551 MTND4P35-201ENST00000604257 1375 ntBASIC2.49□□□□□ -2.01
CLDN3O15551 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
CLDN3O15551 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
CLDN3O15551 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
CLDN3O15551 NACAP2-201ENST00000318548 624 ntBASIC2.48□□□□□ -2.01
CLDN3O15551 RNU1-91P-201ENST00000364746 163 ntBASIC2.48□□□□□ -2.01
CLDN3O15551 RNY3P13-201ENST00000365542 102 ntBASIC2.48□□□□□ -2.01
CLDN3O15551 RNU6-1200P-201ENST00000384162 107 ntBASIC2.48□□□□□ -2.01
CLDN3O15551 AL591416.1-201ENST00000404015 867 ntBASIC2.48□□□□□ -2.01
CLDN3O15551 SNORA3.2-201ENST00000408221 125 ntBASIC2.48□□□□□ -2.01
CLDN3O15551 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.48□□□□□ -2.01
CLDN3O15551 AL135786.1-201ENST00000415892 214 ntBASIC2.48□□□□□ -2.01
CLDN3O15551 RAC1P6-201ENST00000423911 575 ntBASIC2.48□□□□□ -2.01
CLDN3O15551 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC2.48□□□□□ -2.01
CLDN3O15551 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC2.48□□□□□ -2.01
CLDN3O15551 AL356320.1-201ENST00000429616 163 ntBASIC2.48□□□□□ -2.01
CLDN3O15551 AL354941.1-201ENST00000438600 464 ntBASIC2.48□□□□□ -2.01
CLDN3O15551 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC2.48□□□□□ -2.01
CLDN3O15551 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC2.48□□□□□ -2.01
CLDN3O15551 AC011753.1-201ENST00000451001 220 ntBASIC2.48□□□□□ -2.01
CLDN3O15551 AC034244.1-201ENST00000507687 207 ntBASIC2.48□□□□□ -2.01
CLDN3O15551 AC008549.1-201ENST00000512900 643 ntBASIC2.48□□□□□ -2.01
CLDN3O15551 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.48□□□□□ -2.01
CLDN3O15551 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.48□□□□□ -2.01
CLDN3O15551 AC078814.3-201ENST00000553036 491 ntBASIC2.48□□□□□ -2.01
CLDN3O15551 AP001981.2-201ENST00000603241 418 ntBASIC2.48□□□□□ -2.01
CLDN3O15551 AL449363.1-201ENST00000617815 186 ntBASIC2.48□□□□□ -2.01
CLDN3O15551 AL031667.3-201ENST00000620124 655 ntBASIC2.48□□□□□ -2.01
CLDN3O15551 AC007490.1-201ENST00000624321 703 ntBASIC2.48□□□□□ -2.01
CLDN3O15551 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.48□□□□□ -2.01
CLDN3O15551 PISRT1-201ENST00000626175 531 ntBASIC2.48□□□□□ -2.01
CLDN3O15551 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.48□□□□□ -2.01
CLDN3O15551 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
CLDN3O15551 AC004944.1-201ENST00000517807 3059 ntBASIC2.47□□□□□ -2.01
CLDN3O15551 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
CLDN3O15551 Y_RNA.46-201ENST00000362695 102 ntBASIC2.47□□□□□ -2.01
CLDN3O15551 RNU6-288P-201ENST00000363690 104 ntBASIC2.47□□□□□ -2.01
CLDN3O15551 RNU6-19P-201ENST00000384718 107 ntBASIC2.47□□□□□ -2.01
CLDN3O15551 Z98742.3-201ENST00000418637 326 ntBASIC2.47□□□□□ -2.01
CLDN3O15551 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.47□□□□□ -2.01
CLDN3O15551 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC2.47□□□□□ -2.01
CLDN3O15551 AL592045.1-201ENST00000429867 352 ntBASIC2.47□□□□□ -2.01
CLDN3O15551 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC2.47□□□□□ -2.01
CLDN3O15551 CR769767.1-201ENST00000436337 346 ntBASIC2.47□□□□□ -2.01
CLDN3O15551 MRPL42P6-201ENST00000486397 371 ntBASIC2.47□□□□□ -2.01
CLDN3O15551 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.47□□□□□ -2.01
CLDN3O15551 AC116347.2-201ENST00000514912 523 ntBASIC2.47□□□□□ -2.01
CLDN3O15551 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.47□□□□□ -2.01
CLDN3O15551 RNA5SP82-201ENST00000516707 92 ntBASIC2.47□□□□□ -2.01
CLDN3O15551 SCARNA3-201ENST00000517097 143 ntBASIC2.47□□□□□ -2.01
CLDN3O15551 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.47□□□□□ -2.01
CLDN3O15551 OR4R1P-201ENST00000529879 463 ntBASIC2.47□□□□□ -2.01
CLDN3O15551 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC2.47□□□□□ -2.01
CLDN3O15551 AC010186.2-204ENST00000537668 439 ntBASIC2.47□□□□□ -2.01
CLDN3O15551 AC090888.2-201ENST00000559765 1144 ntBASIC2.47□□□□□ -2.01
CLDN3O15551 MIR3146-201ENST00000580367 79 ntBASIC2.47□□□□□ -2.01
CLDN3O15551 MIR4765-201ENST00000585007 77 ntBASIC2.47□□□□□ -2.01
CLDN3O15551 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.47□□□□□ -2.01
CLDN3O15551 AC008121.1-201ENST00000603244 268 ntBASIC2.47□□□□□ -2.01
CLDN3O15551 BNIP3P9-201ENST00000603714 553 ntBASIC2.47□□□□□ -2.01
CLDN3O15551 AC013244.3-201ENST00000605614 388 ntBASIC2.47□□□□□ -2.01
CLDN3O15551 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.47□□□□□ -2.01
CLDN3O15551 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.47□□□□□ -2.01
CLDN3O15551 AL589994.2-201ENST00000621124 579 ntBASIC2.47□□□□□ -2.01
CLDN3O15551 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
CLDN3O15551 MIR7157-201ENST00000635801 60 ntBASIC2.47□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms