Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 AC017104.5-201ENST00000637647 639 ntBASIC0.78□□□□□ -2.28
HMGN4O00479 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC0.78□□□□□ -2.29
HMGN4O00479 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC0.77□□□□□ -2.29
HMGN4O00479 RPL23AP36-201ENST00000413895 458 ntBASIC0.77□□□□□ -2.29
HMGN4O00479 RPP40P1-201ENST00000426762 456 ntBASIC0.77□□□□□ -2.29
HMGN4O00479 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC0.77□□□□□ -2.29
HMGN4O00479 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC0.77□□□□□ -2.29
HMGN4O00479 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC0.77□□□□□ -2.29
HMGN4O00479 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC0.77□□□□□ -2.29
HMGN4O00479 HMGN1P7-201ENST00000491722 313 ntBASIC0.77□□□□□ -2.29
HMGN4O00479 AC113420.1-201ENST00000507903 571 ntBASIC0.77□□□□□ -2.29
HMGN4O00479 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC0.77□□□□□ -2.29
HMGN4O00479 RNA5SP445-201ENST00000515889 115 ntBASIC0.77□□□□□ -2.29
HMGN4O00479 RNA5SP112-201ENST00000515937 99 ntBASIC0.77□□□□□ -2.29
HMGN4O00479 RNU6-351P-201ENST00000516097 100 ntBASIC0.77□□□□□ -2.29
HMGN4O00479 SNORA31.16-201ENST00000516773 139 ntBASIC0.77□□□□□ -2.29
HMGN4O00479 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC0.77□□□□□ -2.29
HMGN4O00479 RRN3P3-201ENST00000549207 578 ntBASIC0.77□□□□□ -2.29
HMGN4O00479 LSM6P2-201ENST00000552208 177 ntBASIC0.77□□□□□ -2.29
HMGN4O00479 DUXAP1-201ENST00000556632 463 ntBASIC0.77□□□□□ -2.29
HMGN4O00479 AC007151.1-201ENST00000572774 483 ntBASIC0.77□□□□□ -2.29
HMGN4O00479 MIR4498-201ENST00000577599 66 ntBASIC0.77□□□□□ -2.29
HMGN4O00479 MIR4698-201ENST00000577795 80 ntBASIC0.77□□□□□ -2.29
HMGN4O00479 MIR3973-201ENST00000579824 107 ntBASIC0.77□□□□□ -2.29
HMGN4O00479 AP001004.1-201ENST00000582468 324 ntBASIC0.77□□□□□ -2.29
HMGN4O00479 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC0.77□□□□□ -2.29
HMGN4O00479 AC021646.1-201ENST00000605469 484 ntBASIC0.77□□□□□ -2.29
HMGN4O00479 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC0.77□□□□□ -2.29
HMGN4O00479 AC016542.1-201ENST00000608259 493 ntBASIC0.77□□□□□ -2.29
HMGN4O00479 AP000238.1-201ENST00000608759 426 ntBASIC0.77□□□□□ -2.29
HMGN4O00479 DUSP12P1-201ENST00000612874 516 ntBASIC0.77□□□□□ -2.29
HMGN4O00479 MIR6857-201ENST00000613267 93 ntBASIC0.77□□□□□ -2.29
HMGN4O00479 AL133216.2-202ENST00000634512 349 ntBASIC0.77□□□□□ -2.29
HMGN4O00479 AC087821.2-201ENST00000637086 450 ntBASIC0.77□□□□□ -2.29
HMGN4O00479 ATM-230ENST00000640388 578 ntTSL 5 BASIC0.77□□□□□ -2.29
HMGN4O00479 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC0.76□□□□□ -2.29
HMGN4O00479 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
HMGN4O00479 SNORD114-27-201ENST00000363766 70 ntBASIC0.76□□□□□ -2.29
HMGN4O00479 MIR135A2-201ENST00000384854 100 ntBASIC0.76□□□□□ -2.29
HMGN4O00479 RNU2-43P-201ENST00000410306 190 ntBASIC0.76□□□□□ -2.29
HMGN4O00479 AC009310.1-201ENST00000414414 451 ntBASIC0.76□□□□□ -2.29
HMGN4O00479 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC0.76□□□□□ -2.29
HMGN4O00479 Z82210.1-201ENST00000440037 231 ntBASIC0.76□□□□□ -2.29
HMGN4O00479 ZNF736P11Y-201ENST00000442535 1213 ntBASIC0.76□□□□□ -2.29
HMGN4O00479 AC092685.1-201ENST00000447960 1243 ntBASIC0.76□□□□□ -2.29
HMGN4O00479 AC079448.1-201ENST00000449377 373 ntBASIC0.76□□□□□ -2.29
HMGN4O00479 RPL26P9-201ENST00000457466 433 ntBASIC0.76□□□□□ -2.29
HMGN4O00479 OR2A41P-201ENST00000473586 105 ntBASIC0.76□□□□□ -2.29
HMGN4O00479 AC005840.1-201ENST00000498412 377 ntBASIC0.76□□□□□ -2.29
HMGN4O00479 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
HMGN4O00479 SCARNA15.2-201ENST00000516409 127 ntBASIC0.76□□□□□ -2.29
HMGN4O00479 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC0.76□□□□□ -2.29
HMGN4O00479 HMSD-204ENST00000526932 162 ntTSL 3 BASIC0.76□□□□□ -2.29
HMGN4O00479 AC124947.2-202ENST00000552735 133 ntBASIC0.76□□□□□ -2.29
HMGN4O00479 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC0.76□□□□□ -2.29
HMGN4O00479 AC023825.1-201ENST00000566704 1030 ntBASIC0.76□□□□□ -2.29
HMGN4O00479 VN1R107P-201ENST00000601784 209 ntBASIC0.76□□□□□ -2.29
HMGN4O00479 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC0.76□□□□□ -2.29
HMGN4O00479 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC0.76□□□□□ -2.29
HMGN4O00479 AC092608.3-201ENST00000625017 386 ntBASIC0.76□□□□□ -2.29
HMGN4O00479 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC0.76□□□□□ -2.29
HMGN4O00479 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.76□□□□□ -2.29
HMGN4O00479 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
HMGN4O00479 CBX3P1-201ENST00000325243 554 ntBASIC0.75□□□□□ -2.29
HMGN4O00479 RNU5A-1-201ENST00000362698 116 ntBASIC0.75□□□□□ -2.29
HMGN4O00479 RNU6-486P-201ENST00000363116 107 ntBASIC0.75□□□□□ -2.29
HMGN4O00479 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC0.75□□□□□ -2.29
HMGN4O00479 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.75□□□□□ -2.29
HMGN4O00479 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC0.75□□□□□ -2.29
HMGN4O00479 RN7SKP61-201ENST00000410642 295 ntBASIC0.75□□□□□ -2.29
HMGN4O00479 CYCSP33-201ENST00000414485 327 ntBASIC0.75□□□□□ -2.29
HMGN4O00479 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC0.75□□□□□ -2.29
HMGN4O00479 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC0.75□□□□□ -2.29
HMGN4O00479 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC0.75□□□□□ -2.29
HMGN4O00479 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
HMGN4O00479 AC103851.1-201ENST00000506833 274 ntBASIC0.75□□□□□ -2.29
HMGN4O00479 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC0.75□□□□□ -2.29
HMGN4O00479 RN7SKP265-201ENST00000516448 223 ntBASIC0.75□□□□□ -2.29
HMGN4O00479 HIGD1AP6-201ENST00000521833 279 ntBASIC0.75□□□□□ -2.29
HMGN4O00479 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC0.75□□□□□ -2.29
HMGN4O00479 AP005136.1-201ENST00000579765 429 ntBASIC0.75□□□□□ -2.29
HMGN4O00479 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC0.75□□□□□ -2.29
HMGN4O00479 MTCYBP22-201ENST00000603788 447 ntBASIC0.75□□□□□ -2.29
HMGN4O00479 AC009974.1-201ENST00000608881 455 ntBASIC0.75□□□□□ -2.29
HMGN4O00479 AL136313.1-201ENST00000624804 202 ntBASIC0.75□□□□□ -2.29
HMGN4O00479 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC0.75□□□□□ -2.29
HMGN4O00479 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC0.74□□□□□ -2.29
HMGN4O00479 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC0.74□□□□□ -2.29
HMGN4O00479 Y_RNA.67-201ENST00000362870 100 ntBASIC0.74□□□□□ -2.29
HMGN4O00479 RNU6-1187P-201ENST00000364771 110 ntBASIC0.74□□□□□ -2.29
HMGN4O00479 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC0.74□□□□□ -2.29
HMGN4O00479 MIR222-201ENST00000384992 110 ntBASIC0.74□□□□□ -2.29
HMGN4O00479 MIR618-201ENST00000385287 98 ntBASIC0.74□□□□□ -2.29
HMGN4O00479 PIGPP2-201ENST00000411569 458 ntBASIC0.74□□□□□ -2.29
HMGN4O00479 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC0.74□□□□□ -2.29
HMGN4O00479 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC0.74□□□□□ -2.29
HMGN4O00479 AL449283.1-202ENST00000418249 604 ntBASIC0.74□□□□□ -2.29
HMGN4O00479 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC0.74□□□□□ -2.29
HMGN4O00479 AL512637.2-201ENST00000431287 1256 ntBASIC0.74□□□□□ -2.29
HMGN4O00479 FABP5P14-201ENST00000437273 393 ntBASIC0.74□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms