Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 AC091965.2-201ENST00000512324 613 ntBASIC1.89□□□□□ -2.11
TRAV40A0A0B4J280 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC1.89□□□□□ -2.11
TRAV40A0A0B4J280 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC1.89□□□□□ -2.11
TRAV40A0A0B4J280 SNORA31.11-201ENST00000516528 139 ntBASIC1.89□□□□□ -2.11
TRAV40A0A0B4J280 RNA5SP337-201ENST00000517007 109 ntBASIC1.89□□□□□ -2.11
TRAV40A0A0B4J280 RNU2-46P-201ENST00000517038 113 ntBASIC1.89□□□□□ -2.11
TRAV40A0A0B4J280 RNU6-711P-201ENST00000517255 106 ntBASIC1.89□□□□□ -2.11
TRAV40A0A0B4J280 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC1.89□□□□□ -2.11
TRAV40A0A0B4J280 MTND2P38-201ENST00000522536 667 ntBASIC1.89□□□□□ -2.11
TRAV40A0A0B4J280 AP006587.4-201ENST00000526053 529 ntBASIC1.89□□□□□ -2.11
TRAV40A0A0B4J280 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC1.89□□□□□ -2.11
TRAV40A0A0B4J280 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC1.89□□□□□ -2.11
TRAV40A0A0B4J280 ACTR3BP3-201ENST00000565577 979 ntBASIC1.89□□□□□ -2.11
TRAV40A0A0B4J280 AC067747.1-201ENST00000608026 250 ntBASIC1.89□□□□□ -2.11
TRAV40A0A0B4J280 AC091304.9-201ENST00000612091 226 ntBASIC1.89□□□□□ -2.11
TRAV40A0A0B4J280 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
TRAV40A0A0B4J280 MTND1P37-201ENST00000636562 264 ntBASIC1.89□□□□□ -2.11
TRAV40A0A0B4J280 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
TRAV40A0A0B4J280 AC016717.2-201ENST00000609089 5141 ntBASIC1.89□□□□□ -2.11
TRAV40A0A0B4J280 AC092104.1-201ENST00000497346 1441 ntBASIC1.89□□□□□ -2.11
TRAV40A0A0B4J280 CUL1P1-201ENST00000509510 2425 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 AC007785.2-201ENST00000598627 1916 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 U8.3-201ENST00000363321 132 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 RNU6-511P-201ENST00000363496 107 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 SMIM11P1-201ENST00000369586 178 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 SNORD115.1-201ENST00000391109 76 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 RNU1-101P-201ENST00000391171 127 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 RPS3AP36-201ENST00000398190 775 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 AL354719.1-201ENST00000406535 843 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 AC092809.3-201ENST00000415453 231 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 AC090960.1-201ENST00000421072 306 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 RPL7L1P10-201ENST00000427790 463 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 AC244035.1-201ENST00000430042 390 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 MED14P1-201ENST00000430517 648 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 AL512844.2-201ENST00000433990 593 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 RPS15AP28-201ENST00000435088 386 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 AC104850.1-201ENST00000435940 476 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 RPL35AP22-201ENST00000436855 335 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 MTND2P22-201ENST00000444325 1033 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 USP9YP29-201ENST00000445112 563 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 RPL30P5-201ENST00000494923 336 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 RPS29P21-201ENST00000496272 170 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 AC112204.1-201ENST00000502591 103 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 AC010587.1-201ENST00000505809 469 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 MTCO1P47-201ENST00000523889 1271 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 AC022878.1-201ENST00000530684 149 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 RPL21P5-201ENST00000554662 472 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 MIR1273D-201ENST00000577266 86 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 MIR3913-1-201ENST00000577744 102 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 KC877982.1-201ENST00000602313 470 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 MTND4LP5-201ENST00000605152 292 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 uc_338.12-201ENST00000616344 181 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 AC009878.1-201ENST00000621819 340 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 AC002064.3-201ENST00000623448 346 ntBASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
TRAV40A0A0B4J280 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
TRAV40A0A0B4J280 AC002546.1-201ENST00000588041 2504 ntBASIC1.87□□□□□ -2.11
TRAV40A0A0B4J280 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
TRAV40A0A0B4J280 RNU6-512P-201ENST00000364438 103 ntBASIC1.87□□□□□ -2.11
TRAV40A0A0B4J280 SNORA14A-201ENST00000364773 135 ntBASIC1.87□□□□□ -2.11
TRAV40A0A0B4J280 CD24P4-201ENST00000382840 243 ntBASIC1.87□□□□□ -2.11
TRAV40A0A0B4J280 NDUFS5P1-201ENST00000405668 289 ntBASIC1.87□□□□□ -2.11
TRAV40A0A0B4J280 FCF1P10-201ENST00000407590 479 ntBASIC1.87□□□□□ -2.11
TRAV40A0A0B4J280 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC1.87□□□□□ -2.11
TRAV40A0A0B4J280 RN7SKP142-201ENST00000411236 328 ntBASIC1.87□□□□□ -2.11
TRAV40A0A0B4J280 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC1.87□□□□□ -2.11
TRAV40A0A0B4J280 RPL17P12-201ENST00000413391 526 ntBASIC1.87□□□□□ -2.11
TRAV40A0A0B4J280 DPH3P2-201ENST00000422618 250 ntBASIC1.87□□□□□ -2.11
TRAV40A0A0B4J280 TMEM167AP1-201ENST00000423409 219 ntBASIC1.87□□□□□ -2.11
TRAV40A0A0B4J280 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC1.87□□□□□ -2.11
TRAV40A0A0B4J280 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC1.87□□□□□ -2.11
TRAV40A0A0B4J280 MTCO2P16-201ENST00000436962 677 ntBASIC1.87□□□□□ -2.11
TRAV40A0A0B4J280 HMGB3P12-201ENST00000438745 556 ntBASIC1.87□□□□□ -2.11
TRAV40A0A0B4J280 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC1.87□□□□□ -2.11
TRAV40A0A0B4J280 AC096638.1-201ENST00000444678 216 ntBASIC1.87□□□□□ -2.11
TRAV40A0A0B4J280 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms