Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC2.51□□□□□ -2.01
FOXA2Q9Y261 MIR3199-1-201ENST00000582434 88 ntBASIC2.51□□□□□ -2.01
FOXA2Q9Y261 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.51□□□□□ -2.01
FOXA2Q9Y261 CLIC4P2-201ENST00000601934 717 ntBASIC2.51□□□□□ -2.01
FOXA2Q9Y261 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC2.51□□□□□ -2.01
FOXA2Q9Y261 AC012409.4-201ENST00000612923 249 ntBASIC2.51□□□□□ -2.01
FOXA2Q9Y261 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
FOXA2Q9Y261 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
FOXA2Q9Y261 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC2.51□□□□□ -2.01
FOXA2Q9Y261 MTND5P19-201ENST00000424872 1794 ntBASIC2.51□□□□□ -2.01
FOXA2Q9Y261 AC008264.2-201ENST00000610193 3731 ntBASIC2.51□□□□□ -2.01
FOXA2Q9Y261 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC2.51□□□□□ -2.01
FOXA2Q9Y261 MTND4P27-201ENST00000450813 1354 ntBASIC2.5□□□□□ -2.01
FOXA2Q9Y261 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC2.5□□□□□ -2.01
FOXA2Q9Y261 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
FOXA2Q9Y261 RNU4-91P-201ENST00000364778 135 ntBASIC2.5□□□□□ -2.01
FOXA2Q9Y261 SNORA24.1-201ENST00000384401 135 ntBASIC2.5□□□□□ -2.01
FOXA2Q9Y261 RNU6-1328P-201ENST00000410938 106 ntBASIC2.5□□□□□ -2.01
FOXA2Q9Y261 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.5□□□□□ -2.01
FOXA2Q9Y261 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC2.5□□□□□ -2.01
FOXA2Q9Y261 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.5□□□□□ -2.01
FOXA2Q9Y261 AC009969.1-201ENST00000438726 172 ntBASIC2.5□□□□□ -2.01
FOXA2Q9Y261 AC104389.3-201ENST00000445629 235 ntBASIC2.5□□□□□ -2.01
FOXA2Q9Y261 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.5□□□□□ -2.01
FOXA2Q9Y261 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC2.5□□□□□ -2.01
FOXA2Q9Y261 RNA5SP269-201ENST00000459032 137 ntBASIC2.5□□□□□ -2.01
FOXA2Q9Y261 RN7SL863P-201ENST00000462370 296 ntBASIC2.5□□□□□ -2.01
FOXA2Q9Y261 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC2.5□□□□□ -2.01
FOXA2Q9Y261 AC023194.1-201ENST00000493084 308 ntBASIC2.5□□□□□ -2.01
FOXA2Q9Y261 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC2.5□□□□□ -2.01
FOXA2Q9Y261 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC2.5□□□□□ -2.01
FOXA2Q9Y261 RNU6-123P-201ENST00000516163 102 ntBASIC2.5□□□□□ -2.01
FOXA2Q9Y261 RNU6-1220P-201ENST00000517126 108 ntBASIC2.5□□□□□ -2.01
FOXA2Q9Y261 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.5□□□□□ -2.01
FOXA2Q9Y261 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC2.5□□□□□ -2.01
FOXA2Q9Y261 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC2.5□□□□□ -2.01
FOXA2Q9Y261 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC2.5□□□□□ -2.01
FOXA2Q9Y261 OSBPL9P5-201ENST00000542581 171 ntBASIC2.5□□□□□ -2.01
FOXA2Q9Y261 AC087883.1-201ENST00000551882 391 ntBASIC2.5□□□□□ -2.01
FOXA2Q9Y261 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.5□□□□□ -2.01
FOXA2Q9Y261 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC2.5□□□□□ -2.01
FOXA2Q9Y261 MIR4506-201ENST00000584693 77 ntBASIC2.5□□□□□ -2.01
FOXA2Q9Y261 MIR4765-201ENST00000585007 77 ntBASIC2.5□□□□□ -2.01
FOXA2Q9Y261 SEPT7P9-203ENST00000604116 343 ntBASIC2.5□□□□□ -2.01
FOXA2Q9Y261 Z94722.1-201ENST00000604328 474 ntBASIC2.5□□□□□ -2.01
FOXA2Q9Y261 AC121247.2-201ENST00000604776 136 ntBASIC2.5□□□□□ -2.01
FOXA2Q9Y261 RPL23AP88-201ENST00000605759 454 ntBASIC2.5□□□□□ -2.01
FOXA2Q9Y261 MIR7112-201ENST00000616126 65 ntBASIC2.5□□□□□ -2.01
FOXA2Q9Y261 MIR6134-201ENST00000617606 109 ntBASIC2.5□□□□□ -2.01
FOXA2Q9Y261 AC138932.5-201ENST00000617759 563 ntBASIC2.5□□□□□ -2.01
FOXA2Q9Y261 FARSBP1-201ENST00000435808 1778 ntBASIC2.5□□□□□ -2.01
FOXA2Q9Y261 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.5□□□□□ -2.01
FOXA2Q9Y261 AL353743.1-202ENST00000431724 1695 ntBASIC2.5□□□□□ -2.01
FOXA2Q9Y261 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
FOXA2Q9Y261 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
FOXA2Q9Y261 AC103710.2-202ENST00000641454 2853 ntBASIC2.49□□□□□ -2.01
FOXA2Q9Y261 U3.4-201ENST00000363352 213 ntBASIC2.49□□□□□ -2.01
FOXA2Q9Y261 SNORA51.4-201ENST00000364993 124 ntBASIC2.49□□□□□ -2.01
FOXA2Q9Y261 U8.9-201ENST00000365667 134 ntBASIC2.49□□□□□ -2.01
FOXA2Q9Y261 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.49□□□□□ -2.01
FOXA2Q9Y261 Z98749.2-208ENST00000381646 500 ntBASIC2.49□□□□□ -2.01
FOXA2Q9Y261 MIR218-1-201ENST00000384999 110 ntBASIC2.49□□□□□ -2.01
FOXA2Q9Y261 SNORA40C-201ENST00000391285 128 ntBASIC2.49□□□□□ -2.01
FOXA2Q9Y261 CISD1P1-201ENST00000393907 327 ntBASIC2.49□□□□□ -2.01
FOXA2Q9Y261 UBE2V1P2-201ENST00000397758 440 ntBASIC2.49□□□□□ -2.01
FOXA2Q9Y261 RNU6-195P-201ENST00000411352 109 ntBASIC2.49□□□□□ -2.01
FOXA2Q9Y261 RNA5SP111-201ENST00000411386 101 ntBASIC2.49□□□□□ -2.01
FOXA2Q9Y261 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.49□□□□□ -2.01
FOXA2Q9Y261 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.49□□□□□ -2.01
FOXA2Q9Y261 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC2.49□□□□□ -2.01
FOXA2Q9Y261 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.49□□□□□ -2.01
FOXA2Q9Y261 FABP5P14-201ENST00000437273 393 ntBASIC2.49□□□□□ -2.01
FOXA2Q9Y261 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.49□□□□□ -2.01
FOXA2Q9Y261 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC2.49□□□□□ -2.01
FOXA2Q9Y261 Z75741.1-201ENST00000446793 314 ntBASIC2.49□□□□□ -2.01
FOXA2Q9Y261 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC2.49□□□□□ -2.01
FOXA2Q9Y261 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC2.49□□□□□ -2.01
FOXA2Q9Y261 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.49□□□□□ -2.01
FOXA2Q9Y261 AC023141.11-201ENST00000508864 202 ntBASIC2.49□□□□□ -2.01
FOXA2Q9Y261 AC119751.5-201ENST00000514077 770 ntBASIC2.49□□□□□ -2.01
FOXA2Q9Y261 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.49□□□□□ -2.01
FOXA2Q9Y261 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.49□□□□□ -2.01
FOXA2Q9Y261 NRBF2P1-201ENST00000587407 859 ntBASIC2.49□□□□□ -2.01
FOXA2Q9Y261 AL590229.1-201ENST00000603497 542 ntBASIC2.49□□□□□ -2.01
FOXA2Q9Y261 AC007179.3-201ENST00000604976 235 ntBASIC2.49□□□□□ -2.01
FOXA2Q9Y261 AC126118.1-201ENST00000607744 628 ntBASIC2.49□□□□□ -2.01
FOXA2Q9Y261 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC2.49□□□□□ -2.01
FOXA2Q9Y261 uc_338.14-201ENST00000613162 166 ntBASIC2.49□□□□□ -2.01
FOXA2Q9Y261 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.49□□□□□ -2.01
FOXA2Q9Y261 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.49□□□□□ -2.01
FOXA2Q9Y261 AC135776.4-201ENST00000624300 1904 ntBASIC2.48□□□□□ -2.01
FOXA2Q9Y261 CDC27P3-201ENST00000635418 1910 ntBASIC2.48□□□□□ -2.01
FOXA2Q9Y261 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
FOXA2Q9Y261 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
FOXA2Q9Y261 RNU6-179P-201ENST00000363350 107 ntBASIC2.48□□□□□ -2.01
FOXA2Q9Y261 RNU6-166P-201ENST00000384371 107 ntBASIC2.48□□□□□ -2.01
FOXA2Q9Y261 SNORA26.7-201ENST00000391288 122 ntBASIC2.48□□□□□ -2.01
FOXA2Q9Y261 RN7SKP58-201ENST00000411010 305 ntBASIC2.48□□□□□ -2.01
FOXA2Q9Y261 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC2.48□□□□□ -2.01
FOXA2Q9Y261 OFD1P1Y-201ENST00000411756 1225 ntBASIC2.48□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 136.4 ms