Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 VN1R17P-201ENST00000472048 1090 ntBASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 RPS15AP34-201ENST00000487776 387 ntBASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 MTND3P22-201ENST00000510932 243 ntBASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 AC104136.1-201ENST00000512969 394 ntBASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 RN7SKP256-201ENST00000517201 314 ntBASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 AC104027.1-201ENST00000521887 300 ntBASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 MIR3690-201ENST00000580266 75 ntBASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 MIR3941-201ENST00000582572 103 ntBASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 VN1R80P-201ENST00000597126 338 ntBASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 AC009248.2-201ENST00000619826 254 ntBASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 AL136221.1-201ENST00000621449 509 ntBASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 MTND4P35-201ENST00000604257 1375 ntBASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.98□□□□□ -1.77
LIMCH1Q9UPQ0 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 RNA5SP124-201ENST00000362739 110 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 RNA5SP197-201ENST00000363357 119 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 U3.12-201ENST00000364498 214 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 AL359837.1-201ENST00000381357 287 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 Y_RNA.399-201ENST00000383955 105 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 SNORA5A-201ENST00000384111 134 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 RNU6-1127P-201ENST00000384580 107 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 Y_RNA.530-201ENST00000384587 101 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 SNORD17-201ENST00000390930 237 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 SNORA57.1-201ENST00000391227 145 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 CYCSP19-201ENST00000411715 316 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 RAB9AP3-201ENST00000412737 573 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 AC092809.3-201ENST00000415453 231 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 RPL7P10-201ENST00000417407 739 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 NCOR1P3-201ENST00000420479 303 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 AL365400.1-201ENST00000431854 640 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 IFNA20P-201ENST00000436840 528 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 HMGB3P11-201ENST00000440127 604 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 RAB9AP1-201ENST00000449393 573 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 AL590639.1-201ENST00000456484 337 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 RNU6-1208P-201ENST00000459588 107 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 SNRPGP3-201ENST00000469405 227 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 AC106707.2-201ENST00000484182 374 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 Y_RNA.665-201ENST00000516177 98 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 RNU2-58P-201ENST00000516403 183 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 RNA5SP291-201ENST00000517222 105 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 IGKV2-26-201ENST00000518305 343 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 AC092807.2-201ENST00000609367 243 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 AL391261.4-201ENST00000616012 481 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 MIR7153-201ENST00000637758 57 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.97□□□□□ -1.77
LIMCH1Q9UPQ0 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
LIMCH1Q9UPQ0 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.77
LIMCH1Q9UPQ0 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
LIMCH1Q9UPQ0 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 UBE2L2-201ENST00000254302 429 ntBASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 RNU6-1167P-201ENST00000363227 94 ntBASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 RNU6-522P-201ENST00000364497 107 ntBASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 Y_RNA.373-201ENST00000365600 103 ntBASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 SNORA32.2-201ENST00000384049 122 ntBASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 RNU6-434P-201ENST00000384376 107 ntBASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 RNA5SP129-201ENST00000410276 118 ntBASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 RNU2-37P-201ENST00000410695 177 ntBASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 BX842559.1-201ENST00000419615 532 ntBASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 AL645937.1-202ENST00000421799 937 ntBASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 AL160275.3-201ENST00000423876 471 ntBASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 RPL23AP62-201ENST00000463396 453 ntBASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 AC025518.1-201ENST00000479856 347 ntBASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 AL160314.1-201ENST00000490836 438 ntBASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 FAM206BP-201ENST00000510179 541 ntBASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 RNU6-1256P-201ENST00000516539 103 ntBASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 RNU6-914P-201ENST00000516749 109 ntBASIC3.96□□□□□ -1.78
LIMCH1Q9UPQ0 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 156.3 ms