Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
VPS4AQ9UN37 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
VPS4AQ9UN37 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
VPS4AQ9UN37 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.54□□□□□ -1.84
VPS4AQ9UN37 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.53□□□□□ -1.84
VPS4AQ9UN37 MTND4P12-201ENST00000498999 1377 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 RNU6-845P-201ENST00000362578 103 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 RNU6-1287P-201ENST00000362914 107 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 Y_RNA.534-201ENST00000384599 112 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 RNU6-1060P-201ENST00000384664 107 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 AL606923.1-201ENST00000406616 190 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 AC096664.2-201ENST00000411843 406 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 AC092809.3-201ENST00000415453 231 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 Z85995.1-201ENST00000415547 335 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
VPS4AQ9UN37 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.53□□□□□ -1.84
VPS4AQ9UN37 AL158156.1-201ENST00000422509 473 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 RPL21P66-201ENST00000426566 466 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 AL159987.2-201ENST00000432754 307 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS4AQ9UN37 RPS24P13-201ENST00000442520 397 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 HMGN2P16-201ENST00000456802 261 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 AL133162.1-201ENST00000463228 453 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 RPL21P8-201ENST00000465083 535 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 RPL21P99-201ENST00000480369 423 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
VPS4AQ9UN37 AL359273.1-201ENST00000510918 627 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 PHBP14-201ENST00000512887 367 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 RNU6-677P-201ENST00000516914 101 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 RANP3-201ENST00000530970 276 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 AC008011.1-201ENST00000545989 227 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 PSMA3P-201ENST00000555485 635 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 MTCO3P23-201ENST00000561363 289 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 AC106782.4-201ENST00000568264 210 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 AC011712.1-201ENST00000588959 234 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 C8orf59P2-201ENST00000603441 271 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 AL390240.1-201ENST00000612950 384 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 AL359547.2-201ENST00000615810 418 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 XIST_intron.1-201ENST00000619444 68 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 AL136221.1-201ENST00000621449 509 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 AC099654.5-201ENST00000636479 350 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
VPS4AQ9UN37 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
VPS4AQ9UN37 OR4G2P-202ENST00000641004 1759 ntBASIC3.53□□□□□ -1.84
VPS4AQ9UN37 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
VPS4AQ9UN37 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.85
VPS4AQ9UN37 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
VPS4AQ9UN37 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.52□□□□□ -1.85
VPS4AQ9UN37 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VPS4AQ9UN37 RNA5SP50-201ENST00000363731 107 ntBASIC3.52□□□□□ -1.85
VPS4AQ9UN37 RNU6-82P-201ENST00000363970 107 ntBASIC3.52□□□□□ -1.85
VPS4AQ9UN37 RNU6-767P-201ENST00000384132 107 ntBASIC3.52□□□□□ -1.85
VPS4AQ9UN37 RNU6-1127P-201ENST00000384580 107 ntBASIC3.52□□□□□ -1.85
VPS4AQ9UN37 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VPS4AQ9UN37 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS4AQ9UN37 AL162578.1-201ENST00000406202 378 ntBASIC3.52□□□□□ -1.85
VPS4AQ9UN37 AP000567.1-201ENST00000406413 156 ntBASIC3.52□□□□□ -1.85
VPS4AQ9UN37 RPS12P24-201ENST00000412619 387 ntBASIC3.52□□□□□ -1.85
VPS4AQ9UN37 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VPS4AQ9UN37 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS4AQ9UN37 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS4AQ9UN37 ARL5AP1-201ENST00000418991 388 ntBASIC3.52□□□□□ -1.85
VPS4AQ9UN37 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS4AQ9UN37 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS4AQ9UN37 RPL27AP8-201ENST00000424277 446 ntBASIC3.52□□□□□ -1.85
VPS4AQ9UN37 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.52□□□□□ -1.85
VPS4AQ9UN37 AL591704.1-201ENST00000432574 275 ntBASIC3.52□□□□□ -1.85
VPS4AQ9UN37 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.52□□□□□ -1.85
VPS4AQ9UN37 NDUFB1P1-201ENST00000435191 180 ntBASIC3.52□□□□□ -1.85
VPS4AQ9UN37 MTND1P11-201ENST00000456661 876 ntBASIC3.52□□□□□ -1.85
VPS4AQ9UN37 RNU6-953P-201ENST00000459154 107 ntBASIC3.52□□□□□ -1.85
VPS4AQ9UN37 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.52□□□□□ -1.85
VPS4AQ9UN37 RPS20P22-201ENST00000473700 357 ntBASIC3.52□□□□□ -1.85
VPS4AQ9UN37 AC008549.1-201ENST00000512900 643 ntBASIC3.52□□□□□ -1.85
VPS4AQ9UN37 Y_RNA.665-201ENST00000516177 98 ntBASIC3.52□□□□□ -1.85
VPS4AQ9UN37 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS4AQ9UN37 MTND4P7-201ENST00000523876 130 ntBASIC3.52□□□□□ -1.85
VPS4AQ9UN37 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.52□□□□□ -1.85
VPS4AQ9UN37 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.52□□□□□ -1.85
VPS4AQ9UN37 AC004024.1-201ENST00000549244 247 ntBASIC3.52□□□□□ -1.85
VPS4AQ9UN37 MIR4513-201ENST00000581077 86 ntBASIC3.52□□□□□ -1.85
VPS4AQ9UN37 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VPS4AQ9UN37 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS4AQ9UN37 MIR8058-201ENST00000615737 89 ntBASIC3.52□□□□□ -1.85
VPS4AQ9UN37 uc_338.34-201ENST00000617467 174 ntBASIC3.52□□□□□ -1.85
VPS4AQ9UN37 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.52□□□□□ -1.85
VPS4AQ9UN37 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS4AQ9UN37 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS4AQ9UN37 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS4AQ9UN37 AC121333.1-201ENST00000567488 2709 ntBASIC3.51□□□□□ -1.85
VPS4AQ9UN37 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.51□□□□□ -1.85
VPS4AQ9UN37 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
VPS4AQ9UN37 RNU6-797P-201ENST00000363101 109 ntBASIC3.51□□□□□ -1.85
VPS4AQ9UN37 RNU4-66P-201ENST00000365199 138 ntBASIC3.51□□□□□ -1.85
VPS4AQ9UN37 RNU6-1009P-201ENST00000390996 107 ntBASIC3.51□□□□□ -1.85
VPS4AQ9UN37 AL592114.1-201ENST00000403842 483 ntBASIC3.51□□□□□ -1.85
VPS4AQ9UN37 MIR1290-201ENST00000408735 78 ntBASIC3.51□□□□□ -1.85
VPS4AQ9UN37 Y_RNA.615-201ENST00000410769 117 ntBASIC3.51□□□□□ -1.85
VPS4AQ9UN37 PDCL2P1-201ENST00000419302 352 ntBASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms