Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC064801.1-201ENST00000612025 407 ntBASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 MIR7702-201ENST00000621931 59 ntBASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 AC091953.5-201ENST00000622919 233 ntBASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 MIR4496-201ENST00000635896 61 ntBASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 EIF2AP4-201ENST00000424793 1781 ntBASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 AL122126.1-201ENST00000546905 1318 ntBASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 RNU4-50P-201ENST00000364361 141 ntBASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 RNU6-393P-201ENST00000384475 107 ntBASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 RNU6-493P-201ENST00000391321 108 ntBASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 RNU2-25P-201ENST00000411041 191 ntBASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 AC069218.2-201ENST00000411665 344 ntBASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 EIF1P2-201ENST00000428233 350 ntBASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 AC011742.1-201ENST00000431448 434 ntBASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 RPL23AP52-201ENST00000439311 478 ntBASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 AL031274.1-201ENST00000450334 232 ntBASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 AC104073.1-201ENST00000451988 151 ntBASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 SNORD121B-201ENST00000458838 81 ntBASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 snoU13.1-201ENST00000459157 104 ntBASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 AC104164.2-201ENST00000496953 495 ntBASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 RNU2-69P-201ENST00000516061 100 ntBASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 RNU4-71P-201ENST00000516258 113 ntBASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 RNU6-798P-201ENST00000516912 103 ntBASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 AL451044.1-201ENST00000604867 238 ntBASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
CCDC39Q9UFE4 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 RNA5SP447-201ENST00000363749 119 ntBASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 Y_RNA.200-201ENST00000364018 102 ntBASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 RNU6-214P-201ENST00000384130 107 ntBASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 AL138878.1-201ENST00000405131 347 ntBASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 RNU6-121P-201ENST00000410525 99 ntBASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 AL139156.1-201ENST00000412785 841 ntBASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 SETP5-201ENST00000437270 562 ntBASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 NDUFS5P3-201ENST00000450668 321 ntBASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 BX276092.4-201ENST00000452056 248 ntBASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 RPL23AP24-201ENST00000458203 385 ntBASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 SNORD97-201ENST00000459187 142 ntBASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 RPL37P6-202ENST00000464216 403 ntBASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 AC087385.1-201ENST00000475062 312 ntBASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 AC005726.1-201ENST00000494679 427 ntBASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 RNA5SP73-201ENST00000516744 108 ntBASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 RN7SKP234-201ENST00000517173 224 ntBASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 HMGN1P28-201ENST00000521340 364 ntBASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 AC025423.5-201ENST00000550230 219 ntBASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 MIR4443-201ENST00000585052 53 ntBASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 AL138889.2-201ENST00000603883 242 ntBASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 AC099669.2-201ENST00000616549 437 ntBASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 AP000346.3-201ENST00000622821 210 ntBASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 AC009951.1-201ENST00000623674 2614 ntBASIC4.81□□□□□ -1.64
CCDC39Q9UFE4 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 RNU6-1279P-201ENST00000383917 103 ntBASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 MIR3074-201ENST00000384885 81 ntBASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 MIR1179-201ENST00000408703 91 ntBASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 RNU6-1203P-201ENST00000410703 110 ntBASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 Y_RNA.793-201ENST00000411222 111 ntBASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 RNA5SP107-201ENST00000411358 122 ntBASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 BX276092.3-201ENST00000424182 230 ntBASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 AL157831.1-201ENST00000426134 473 ntBASIC4.8□□□□□ -1.64
CCDC39Q9UFE4 RPS29P17-201ENST00000430795 166 ntBASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms