Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RNU6-953P-201ENST00000459154 107 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 RNU6-1092P-201ENST00000516955 87 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC2.56□□□□□ -2
LHX3Q9UBR4 AC022878.1-201ENST00000530684 149 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.56□□□□□ -2
LHX3Q9UBR4 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.56□□□□□ -2
LHX3Q9UBR4 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC2.56□□□□□ -2
LHX3Q9UBR4 AL157394.1-201ENST00000562983 1224 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.56□□□□□ -2
LHX3Q9UBR4 MIR548AB-201ENST00000584917 84 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 AC007363.1-201ENST00000604736 620 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 AC012360.2-201ENST00000609349 391 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 DUSP12P1-201ENST00000612874 516 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 AL589994.2-201ENST00000621124 579 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 AC243829.7-201ENST00000633081 225 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
LHX3Q9UBR4 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
LHX3Q9UBR4 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.56□□□□□ -2
LHX3Q9UBR4 RNU6-778P-201ENST00000363269 103 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 RNU5E-6P-201ENST00000365574 115 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.55□□□□□ -2
LHX3Q9UBR4 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
LHX3Q9UBR4 RNU1-73P-201ENST00000383971 164 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 MIR592-201ENST00000384959 97 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 MIR887-201ENST00000401258 79 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 RPL26P27-201ENST00000414397 437 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC2.55□□□□□ -2
LHX3Q9UBR4 SKA2P1-201ENST00000425592 390 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 AL356583.2-201ENST00000426536 280 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 AC119618.1-201ENST00000434191 222 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 COX6CP12-201ENST00000446748 202 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.55□□□□□ -2
LHX3Q9UBR4 GSTA11P-201ENST00000452866 669 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 AC126182.1-201ENST00000478134 357 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.55□□□□□ -2
LHX3Q9UBR4 RPL39P36-201ENST00000490784 156 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 RPS27AP10-201ENST00000496103 208 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 AC105252.1-201ENST00000503089 286 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 SEM1P1-201ENST00000506694 209 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC2.55□□□□□ -2
LHX3Q9UBR4 MRPS36P2-201ENST00000512569 299 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 AC114781.4-201ENST00000513707 639 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC2.55□□□□□ -2
LHX3Q9UBR4 RN7SKP24-201ENST00000515888 284 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 RNU6-143P-201ENST00000516942 93 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC2.55□□□□□ -2
LHX3Q9UBR4 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC2.55□□□□□ -2
LHX3Q9UBR4 AP003181.2-201ENST00000528941 181 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 AC007536.1-201ENST00000533382 349 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.55□□□□□ -2
LHX3Q9UBR4 AC027176.1-201ENST00000560204 514 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.55□□□□□ -2
LHX3Q9UBR4 BNIP3P9-201ENST00000603714 553 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 AL358072.1-201ENST00000604156 575 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 AC112191.3-201ENST00000604371 277 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 AC013562.2-201ENST00000611632 603 ntBASIC2.55□□□□□ -2
LHX3Q9UBR4 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
LHX3Q9UBR4 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2.55□□□□□ -2
LHX3Q9UBR4 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.55□□□□□ -2
LHX3Q9UBR4 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
LHX3Q9UBR4 AC110491.1-201ENST00000562191 2010 ntBASIC2.54□□□□□ -2
LHX3Q9UBR4 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
LHX3Q9UBR4 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.54□□□□□ -2
LHX3Q9UBR4 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.54□□□□□ -2
LHX3Q9UBR4 MTND4P4-201ENST00000439033 1366 ntBASIC2.54□□□□□ -2
LHX3Q9UBR4 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.54□□□□□ -2
LHX3Q9UBR4 RNU6-288P-201ENST00000363690 104 ntBASIC2.54□□□□□ -2
LHX3Q9UBR4 SMIM11P1-201ENST00000369586 178 ntBASIC2.54□□□□□ -2
LHX3Q9UBR4 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
LHX3Q9UBR4 AL049545.1-201ENST00000401856 572 ntBASIC2.54□□□□□ -2
LHX3Q9UBR4 RNU2-49P-201ENST00000410666 184 ntBASIC2.54□□□□□ -2
LHX3Q9UBR4 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.54□□□□□ -2
LHX3Q9UBR4 AC009963.1-201ENST00000417265 157 ntBASIC2.54□□□□□ -2
LHX3Q9UBR4 MTND2P18-201ENST00000419962 1030 ntBASIC2.54□□□□□ -2
LHX3Q9UBR4 AC137499.1-201ENST00000427602 88 ntBASIC2.54□□□□□ -2
LHX3Q9UBR4 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC2.54□□□□□ -2
LHX3Q9UBR4 HMGB3P12-201ENST00000438745 556 ntBASIC2.54□□□□□ -2
LHX3Q9UBR4 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.54□□□□□ -2
LHX3Q9UBR4 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC2.54□□□□□ -2
LHX3Q9UBR4 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.54□□□□□ -2
LHX3Q9UBR4 MTCO2P6-201ENST00000463134 685 ntBASIC2.54□□□□□ -2
LHX3Q9UBR4 AC109486.1-201ENST00000486833 374 ntBASIC2.54□□□□□ -2
LHX3Q9UBR4 AC010587.1-201ENST00000505809 469 ntBASIC2.54□□□□□ -2
LHX3Q9UBR4 UTP23-205ENST00000520733 369 ntTSL 3 BASIC2.54□□□□□ -2
LHX3Q9UBR4 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.54□□□□□ -2
LHX3Q9UBR4 ELOCP31-201ENST00000540463 467 ntBASIC2.54□□□□□ -2
LHX3Q9UBR4 GLYCAM1-201ENST00000546596 285 ntBASIC2.54□□□□□ -2
LHX3Q9UBR4 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC2.54□□□□□ -2
LHX3Q9UBR4 AC012065.4-201ENST00000602445 679 ntBASIC2.54□□□□□ -2
LHX3Q9UBR4 AL355598.1-201ENST00000604169 202 ntBASIC2.54□□□□□ -2
LHX3Q9UBR4 AC019159.1-201ENST00000605094 187 ntBASIC2.54□□□□□ -2
LHX3Q9UBR4 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.54□□□□□ -2
LHX3Q9UBR4 AC097520.1-201ENST00000624435 385 ntBASIC2.54□□□□□ -2
LHX3Q9UBR4 AC019226.2-201ENST00000625973 424 ntBASIC2.54□□□□□ -2
LHX3Q9UBR4 ELF2P3-201ENST00000445099 1506 ntBASIC2.53□□□□□ -2
LHX3Q9UBR4 AC026241.1-201ENST00000517873 2142 ntBASIC2.53□□□□□ -2
LHX3Q9UBR4 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
LHX3Q9UBR4 RNU6-960P-201ENST00000364056 120 ntBASIC2.53□□□□□ -2
LHX3Q9UBR4 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.53□□□□□ -2
LHX3Q9UBR4 MT-TH-201ENST00000387441 69 ntBASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 115.1 ms