Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 PISRT1-201ENST00000626175 531 ntBASIC3.17□□□□□ -1.9
ZNF541Q9H0D2 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 RNU5E-1-201ENST00000362477 120 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 SNORD56.2-201ENST00000363242 71 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 RNU6-1042P-201ENST00000384204 107 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AL359634.1-202ENST00000404721 284 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 NDUFS5P1-201ENST00000405668 289 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 RNU4-26P-201ENST00000410270 107 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 BTF3L4P1-201ENST00000413813 468 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AL451054.2-201ENST00000420896 202 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 HMGN2P3-201ENST00000433603 273 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AL512844.2-201ENST00000433990 593 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 HMGN2P5-201ENST00000436882 273 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 PGBD4P3-201ENST00000440731 581 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 CBWD4P-201ENST00000445695 655 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AL590664.1-201ENST00000448065 339 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 MTND1P12-201ENST00000455231 147 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 RBM43P1-201ENST00000476891 1081 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 RPL30P5-201ENST00000494923 336 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 MTND4LP22-201ENST00000508209 276 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 TTC39CP1-201ENST00000512513 755 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AC010265.1-201ENST00000513509 211 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 RNU6-548P-201ENST00000517083 115 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 CASP1P1-201ENST00000526345 212 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AC243972.3-201ENST00000539655 198 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 MIR4293-201ENST00000584305 78 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AL670379.6-201ENST00000603753 252 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AL670379.11-201ENST00000604059 253 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AC013553.2-201ENST00000604244 589 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AC008162.1-201ENST00000604718 254 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AL670379.1-201ENST00000604752 252 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AC007938.3-201ENST00000604965 623 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AL670379.5-201ENST00000605253 252 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AL670379.12-201ENST00000605291 253 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AL670379.8-201ENST00000605353 252 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AL670379.7-201ENST00000605823 252 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 MIR98-201ENST00000606724 119 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AL139286.2-201ENST00000606838 396 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AC090132.2-201ENST00000615881 347 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AC099654.13-201ENST00000639774 207 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.16□□□□□ -1.9
ZNF541Q9H0D2 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
ZNF541Q9H0D2 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
ZNF541Q9H0D2 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.9
ZNF541Q9H0D2 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
ZNF541Q9H0D2 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
ZNF541Q9H0D2 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
ZNF541Q9H0D2 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
ZNF541Q9H0D2 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
ZNF541Q9H0D2 U8.3-201ENST00000363321 132 ntBASIC3.15□□□□□ -1.91
ZNF541Q9H0D2 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
ZNF541Q9H0D2 C1DP2-201ENST00000418167 426 ntBASIC3.15□□□□□ -1.91
ZNF541Q9H0D2 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC3.15□□□□□ -1.91
ZNF541Q9H0D2 TAAR7P-201ENST00000436141 242 ntBASIC3.15□□□□□ -1.91
ZNF541Q9H0D2 AL022238.1-201ENST00000442557 355 ntBASIC3.15□□□□□ -1.91
ZNF541Q9H0D2 HIGD1AP2-201ENST00000446367 280 ntBASIC3.15□□□□□ -1.91
ZNF541Q9H0D2 AL136380.1-201ENST00000447970 162 ntBASIC3.15□□□□□ -1.91
ZNF541Q9H0D2 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC3.15□□□□□ -1.91
ZNF541Q9H0D2 SNRPGP6-201ENST00000451124 220 ntBASIC3.15□□□□□ -1.91
ZNF541Q9H0D2 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.15□□□□□ -1.91
ZNF541Q9H0D2 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC3.15□□□□□ -1.91
ZNF541Q9H0D2 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC3.15□□□□□ -1.91
ZNF541Q9H0D2 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.15□□□□□ -1.91
ZNF541Q9H0D2 AC087883.1-201ENST00000551882 391 ntBASIC3.15□□□□□ -1.91
ZNF541Q9H0D2 NRBF2P1-201ENST00000587407 859 ntBASIC3.15□□□□□ -1.91
ZNF541Q9H0D2 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.15□□□□□ -1.91
ZNF541Q9H0D2 OR5H6-203ENST00000642105 978 ntBASIC3.15□□□□□ -1.91
ZNF541Q9H0D2 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
ZNF541Q9H0D2 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
ZNF541Q9H0D2 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 MAPK10-362ENST00000641864 4484 ntBASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 MIR26A1-201ENST00000362205 77 ntBASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 RNU6-297P-201ENST00000384636 107 ntBASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 RNU6ATAC3P-201ENST00000387974 126 ntBASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 RNU2-36P-201ENST00000410361 191 ntBASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 AC016907.1-201ENST00000419483 435 ntBASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC3.14□□□□□ -1.91
ZNF541Q9H0D2 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms