Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 RNU1-52P-201ENST00000384190 164 ntBASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 MRPL42P2-201ENST00000403169 426 ntBASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 RNU2-8P-201ENST00000410727 190 ntBASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 AL096701.2-201ENST00000416920 238 ntBASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 MTCO2P17-201ENST00000424336 677 ntBASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 TRIM60P10Y-201ENST00000425589 751 ntBASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 GDI2P2-201ENST00000445131 608 ntBASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 AC023194.1-201ENST00000493084 308 ntBASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 HIGD1AP13-201ENST00000509878 289 ntBASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 MTND1P22-201ENST00000510572 951 ntBASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 AP005902.1-201ENST00000521358 186 ntBASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 FAM92A1P1-201ENST00000528023 890 ntBASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 HPRT1P3-201ENST00000539521 576 ntBASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 ARL2BPP2-201ENST00000550907 489 ntBASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 MIR1273C-201ENST00000578669 77 ntBASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 AC005261.5-201ENST00000596280 355 ntBASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 RNU6-87P-201ENST00000607561 108 ntBASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 AC103710.2-201ENST00000609912 942 ntBASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 AC006338.1-201ENST00000618453 749 ntBASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 AC023510.2-201ENST00000622162 746 ntBASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 AC025048.6-202ENST00000627667 438 ntBASIC3.68□□□□□ -1.82
CHMP4AQ9BY43 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 RNA5SP393-201ENST00000363423 117 ntBASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 RNU6-288P-201ENST00000363690 104 ntBASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 RNU6-1280P-201ENST00000365211 107 ntBASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 RNA5SP240-201ENST00000365355 128 ntBASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 SMIM11P1-201ENST00000369586 178 ntBASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 RNU6-533P-201ENST00000384144 107 ntBASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 MIR512-1-201ENST00000384913 84 ntBASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 RNU2-36P-201ENST00000410361 191 ntBASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 AC003685.2-201ENST00000422795 395 ntBASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 RPL7P34-201ENST00000433316 712 ntBASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 AC016691.1-201ENST00000441321 413 ntBASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 LAMTOR3P2-201ENST00000504479 232 ntBASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 RNU6-572P-201ENST00000516724 80 ntBASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 AL133241.1-201ENST00000556832 487 ntBASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 AL157871.3-201ENST00000557231 293 ntBASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 AC022893.3-201ENST00000607665 437 ntBASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 AC108747.1-201ENST00000609508 535 ntBASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.67□□□□□ -1.82
CHMP4AQ9BY43 AL445523.1-201ENST00000451184 1362 ntBASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 MIR26A1-201ENST00000362205 77 ntBASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 RNU1-35P-201ENST00000362782 153 ntBASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 SNORA80A-201ENST00000363922 136 ntBASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 RNU1-138P-201ENST00000384093 164 ntBASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 MIR9-1-201ENST00000385198 89 ntBASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 AL139095.1-201ENST00000404326 391 ntBASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 RNU2-63P-201ENST00000410792 194 ntBASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 AL365184.2-201ENST00000431139 435 ntBASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 AC093899.1-201ENST00000457984 376 ntBASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 RPS29P26-201ENST00000477483 171 ntBASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 RPL37P25-201ENST00000507308 276 ntBASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 AL355816.2-201ENST00000610049 647 ntBASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 AL359547.2-201ENST00000615810 418 ntBASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.66□□□□□ -1.82
CHMP4AQ9BY43 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
CHMP4AQ9BY43 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC3.65□□□□□ -1.82
CHMP4AQ9BY43 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.65□□□□□ -1.82
CHMP4AQ9BY43 Y_RNA.33-201ENST00000362591 102 ntBASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 FCF1P10-201ENST00000407590 479 ntBASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 AL109913.1-201ENST00000421173 514 ntBASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 RPL30P4-201ENST00000429309 333 ntBASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 AC087499.2-201ENST00000432861 149 ntBASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 AL135938.1-201ENST00000443141 297 ntBASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 RPL39P40-201ENST00000445481 146 ntBASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 RGS5-217ENST00000451759 835 ntTSL 3 BASIC3.65□□□□□ -1.83
CHMP4AQ9BY43 AC092001.1-201ENST00000453012 261 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms