Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 AL591416.1-201ENST00000404015 867 ntBASIC3.14□□□□□ -1.91
NR1H4Q96RI1 AC007560.1-201ENST00000426912 237 ntBASIC3.14□□□□□ -1.91
NR1H4Q96RI1 CST9LP2-201ENST00000437612 320 ntBASIC3.14□□□□□ -1.91
NR1H4Q96RI1 CYCSP32-201ENST00000440548 321 ntBASIC3.14□□□□□ -1.91
NR1H4Q96RI1 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.14□□□□□ -1.91
NR1H4Q96RI1 AP002812.1-201ENST00000495378 474 ntBASIC3.14□□□□□ -1.91
NR1H4Q96RI1 AC010460.1-201ENST00000507087 466 ntBASIC3.14□□□□□ -1.91
NR1H4Q96RI1 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.14□□□□□ -1.91
NR1H4Q96RI1 RNU6-572P-201ENST00000516724 80 ntBASIC3.14□□□□□ -1.91
NR1H4Q96RI1 SNORA31.19-201ENST00000517079 126 ntBASIC3.14□□□□□ -1.91
NR1H4Q96RI1 AC025755.1-201ENST00000521306 278 ntBASIC3.14□□□□□ -1.91
NR1H4Q96RI1 SUB1P1-201ENST00000524415 382 ntBASIC3.14□□□□□ -1.91
NR1H4Q96RI1 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.14□□□□□ -1.91
NR1H4Q96RI1 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.14□□□□□ -1.91
NR1H4Q96RI1 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.14□□□□□ -1.91
NR1H4Q96RI1 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.14□□□□□ -1.91
NR1H4Q96RI1 AC068790.6-201ENST00000602558 258 ntBASIC3.14□□□□□ -1.91
NR1H4Q96RI1 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
NR1H4Q96RI1 CR381653.2-201ENST00000624041 768 ntBASIC3.14□□□□□ -1.91
NR1H4Q96RI1 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC3.14□□□□□ -1.91
NR1H4Q96RI1 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC3.14□□□□□ -1.91
NR1H4Q96RI1 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.14□□□□□ -1.91
NR1H4Q96RI1 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
NR1H4Q96RI1 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
NR1H4Q96RI1 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
NR1H4Q96RI1 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
NR1H4Q96RI1 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.13□□□□□ -1.91
NR1H4Q96RI1 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
NR1H4Q96RI1 RNU6-996P-201ENST00000365438 107 ntBASIC3.13□□□□□ -1.91
NR1H4Q96RI1 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
NR1H4Q96RI1 Y_RNA.409-201ENST00000383990 98 ntBASIC3.13□□□□□ -1.91
NR1H4Q96RI1 RNU6-213P-201ENST00000384051 104 ntBASIC3.13□□□□□ -1.91
NR1H4Q96RI1 MIR30B-201ENST00000384850 88 ntBASIC3.13□□□□□ -1.91
NR1H4Q96RI1 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
NR1H4Q96RI1 Z99755.1-201ENST00000414048 380 ntBASIC3.13□□□□□ -1.91
NR1H4Q96RI1 AL353193.1-201ENST00000421444 268 ntBASIC3.13□□□□□ -1.91
NR1H4Q96RI1 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC3.13□□□□□ -1.91
NR1H4Q96RI1 SKA2P1-201ENST00000425592 390 ntBASIC3.13□□□□□ -1.91
NR1H4Q96RI1 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.13□□□□□ -1.91
NR1H4Q96RI1 RPS15AP5-201ENST00000436276 388 ntBASIC3.13□□□□□ -1.91
NR1H4Q96RI1 RPL7P54-201ENST00000438336 674 ntBASIC3.13□□□□□ -1.91
NR1H4Q96RI1 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC3.13□□□□□ -1.91
NR1H4Q96RI1 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC3.13□□□□□ -1.91
NR1H4Q96RI1 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC3.13□□□□□ -1.91
NR1H4Q96RI1 RPL9P33-201ENST00000484311 566 ntBASIC3.13□□□□□ -1.91
NR1H4Q96RI1 RPS29P20-201ENST00000489592 171 ntBASIC3.13□□□□□ -1.91
NR1H4Q96RI1 RPS27AP10-201ENST00000496103 208 ntBASIC3.13□□□□□ -1.91
NR1H4Q96RI1 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.13□□□□□ -1.91
NR1H4Q96RI1 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC3.13□□□□□ -1.91
NR1H4Q96RI1 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.13□□□□□ -1.91
NR1H4Q96RI1 RNU6-703P-201ENST00000516946 107 ntBASIC3.13□□□□□ -1.91
NR1H4Q96RI1 AC022634.1-201ENST00000520765 532 ntBASIC3.13□□□□□ -1.91
NR1H4Q96RI1 AC016957.1-201ENST00000534895 309 ntBASIC3.13□□□□□ -1.91
NR1H4Q96RI1 ZNF519P2-201ENST00000557032 169 ntBASIC3.13□□□□□ -1.91
NR1H4Q96RI1 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.13□□□□□ -1.91
NR1H4Q96RI1 DEFB131E-202ENST00000602581 683 ntBASIC3.13□□□□□ -1.91
NR1H4Q96RI1 AL590392.1-201ENST00000604960 446 ntBASIC3.13□□□□□ -1.91
NR1H4Q96RI1 AP001330.5-201ENST00000607176 411 ntBASIC3.13□□□□□ -1.91
NR1H4Q96RI1 MIR378J-201ENST00000611988 109 ntBASIC3.13□□□□□ -1.91
NR1H4Q96RI1 AL354950.2-201ENST00000617939 290 ntBASIC3.13□□□□□ -1.91
NR1H4Q96RI1 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.13□□□□□ -1.91
NR1H4Q96RI1 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.13□□□□□ -1.91
NR1H4Q96RI1 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
NR1H4Q96RI1 ELF2P3-201ENST00000445099 1506 ntBASIC3.13□□□□□ -1.91
NR1H4Q96RI1 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.13□□□□□ -1.91
NR1H4Q96RI1 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
NR1H4Q96RI1 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
NR1H4Q96RI1 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
NR1H4Q96RI1 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.12□□□□□ -1.91
NR1H4Q96RI1 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.12□□□□□ -1.91
NR1H4Q96RI1 AC068050.1-201ENST00000394891 380 ntBASIC3.12□□□□□ -1.91
NR1H4Q96RI1 AL356057.2-201ENST00000403318 432 ntBASIC3.12□□□□□ -1.91
NR1H4Q96RI1 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC3.12□□□□□ -1.91
NR1H4Q96RI1 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC3.12□□□□□ -1.91
NR1H4Q96RI1 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC3.12□□□□□ -1.91
NR1H4Q96RI1 LAMTOR5P1-201ENST00000444290 270 ntBASIC3.12□□□□□ -1.91
NR1H4Q96RI1 AL078601.1-201ENST00000444542 271 ntBASIC3.12□□□□□ -1.91
NR1H4Q96RI1 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC3.12□□□□□ -1.91
NR1H4Q96RI1 SNRPFP3-201ENST00000457792 225 ntBASIC3.12□□□□□ -1.91
NR1H4Q96RI1 RPL21P41-201ENST00000459863 264 ntBASIC3.12□□□□□ -1.91
NR1H4Q96RI1 AC009646.1-201ENST00000510455 318 ntBASIC3.12□□□□□ -1.91
NR1H4Q96RI1 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.12□□□□□ -1.91
NR1H4Q96RI1 RNA5SP76-201ENST00000516277 87 ntBASIC3.12□□□□□ -1.91
NR1H4Q96RI1 MIR2116-201ENST00000517221 80 ntBASIC3.12□□□□□ -1.91
NR1H4Q96RI1 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC3.12□□□□□ -1.91
NR1H4Q96RI1 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.12□□□□□ -1.91
NR1H4Q96RI1 OR5B10P-201ENST00000532869 642 ntBASIC3.12□□□□□ -1.91
NR1H4Q96RI1 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC3.12□□□□□ -1.91
NR1H4Q96RI1 CYCSP30-201ENST00000546447 172 ntBASIC3.12□□□□□ -1.91
NR1H4Q96RI1 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC3.12□□□□□ -1.91
NR1H4Q96RI1 AL512310.1-201ENST00000548639 172 ntBASIC3.12□□□□□ -1.91
NR1H4Q96RI1 AC027807.1-201ENST00000559921 996 ntBASIC3.12□□□□□ -1.91
NR1H4Q96RI1 AC008752.3-201ENST00000588113 712 ntBASIC3.12□□□□□ -1.91
NR1H4Q96RI1 AC005498.1-201ENST00000592125 465 ntBASIC3.12□□□□□ -1.91
NR1H4Q96RI1 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.12□□□□□ -1.91
NR1H4Q96RI1 AL355877.2-201ENST00000603670 358 ntBASIC3.12□□□□□ -1.91
NR1H4Q96RI1 AL359198.2-201ENST00000611836 194 ntBASIC3.12□□□□□ -1.91
NR1H4Q96RI1 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.12□□□□□ -1.91
NR1H4Q96RI1 MIR3199-2-201ENST00000636243 86 ntBASIC3.12□□□□□ -1.91
NR1H4Q96RI1 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 140.3 ms