Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 AC079382.1-201ENST00000493346 557 ntBASIC3.53□□□□□ -1.84
USP38Q8NB14 RNU1-41P-201ENST00000516161 162 ntBASIC3.53□□□□□ -1.84
USP38Q8NB14 RNU1-48P-201ENST00000516400 162 ntBASIC3.53□□□□□ -1.84
USP38Q8NB14 OR5G4P-201ENST00000525251 760 ntBASIC3.53□□□□□ -1.84
USP38Q8NB14 FAM92A1P1-201ENST00000528023 890 ntBASIC3.53□□□□□ -1.84
USP38Q8NB14 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.53□□□□□ -1.84
USP38Q8NB14 AC005951.1-201ENST00000576706 485 ntBASIC3.53□□□□□ -1.84
USP38Q8NB14 MIR4319-201ENST00000577285 85 ntBASIC3.53□□□□□ -1.84
USP38Q8NB14 MIR2682-201ENST00000580305 110 ntBASIC3.53□□□□□ -1.84
USP38Q8NB14 AL133393.1-201ENST00000603277 287 ntBASIC3.53□□□□□ -1.84
USP38Q8NB14 MIR6076-201ENST00000617521 113 ntBASIC3.53□□□□□ -1.84
USP38Q8NB14 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC3.53□□□□□ -1.84
USP38Q8NB14 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.53□□□□□ -1.84
USP38Q8NB14 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
USP38Q8NB14 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
USP38Q8NB14 Y_RNA.22-201ENST00000362492 102 ntBASIC3.52□□□□□ -1.85
USP38Q8NB14 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.52□□□□□ -1.85
USP38Q8NB14 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
USP38Q8NB14 RNU4-55P-201ENST00000410731 137 ntBASIC3.52□□□□□ -1.85
USP38Q8NB14 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
USP38Q8NB14 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC3.52□□□□□ -1.85
USP38Q8NB14 MTCO1P21-201ENST00000416634 589 ntBASIC3.52□□□□□ -1.85
USP38Q8NB14 SDCBPP3-201ENST00000419629 891 ntBASIC3.52□□□□□ -1.85
USP38Q8NB14 HMGB1P18-201ENST00000438801 619 ntBASIC3.52□□□□□ -1.85
USP38Q8NB14 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.52□□□□□ -1.85
USP38Q8NB14 AL160314.1-201ENST00000490836 438 ntBASIC3.52□□□□□ -1.85
USP38Q8NB14 RPL37P25-201ENST00000507308 276 ntBASIC3.52□□□□□ -1.85
USP38Q8NB14 AC108078.1-201ENST00000508073 725 ntBASIC3.52□□□□□ -1.85
USP38Q8NB14 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.52□□□□□ -1.85
USP38Q8NB14 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC3.52□□□□□ -1.85
USP38Q8NB14 RNA5SP471-201ENST00000516971 106 ntBASIC3.52□□□□□ -1.85
USP38Q8NB14 OR4R1P-201ENST00000529879 463 ntBASIC3.52□□□□□ -1.85
USP38Q8NB14 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
USP38Q8NB14 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.52□□□□□ -1.85
USP38Q8NB14 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
USP38Q8NB14 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
USP38Q8NB14 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.52□□□□□ -1.85
USP38Q8NB14 RPS3AP4-201ENST00000555161 764 ntBASIC3.52□□□□□ -1.85
USP38Q8NB14 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.52□□□□□ -1.85
USP38Q8NB14 AC008536.2-201ENST00000607284 349 ntBASIC3.52□□□□□ -1.85
USP38Q8NB14 AC006111.3-201ENST00000622137 383 ntBASIC3.52□□□□□ -1.85
USP38Q8NB14 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.52□□□□□ -1.85
USP38Q8NB14 MIR6863-201ENST00000636112 90 ntBASIC3.52□□□□□ -1.85
USP38Q8NB14 MTND1P37-201ENST00000636562 264 ntBASIC3.52□□□□□ -1.85
USP38Q8NB14 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
USP38Q8NB14 AL049641.1-201ENST00000441055 1948 ntBASIC3.51□□□□□ -1.85
USP38Q8NB14 Y_RNA.3-201ENST00000362331 103 ntBASIC3.51□□□□□ -1.85
USP38Q8NB14 RNU6-1167P-201ENST00000363227 94 ntBASIC3.51□□□□□ -1.85
USP38Q8NB14 SNORA1.3-201ENST00000384676 136 ntBASIC3.51□□□□□ -1.85
USP38Q8NB14 RNU2-33P-201ENST00000410344 192 ntBASIC3.51□□□□□ -1.85
USP38Q8NB14 RNA5SP229-201ENST00000410809 99 ntBASIC3.51□□□□□ -1.85
USP38Q8NB14 AL513477.1-202ENST00000417061 214 ntBASIC3.51□□□□□ -1.85
USP38Q8NB14 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.51□□□□□ -1.85
USP38Q8NB14 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.51□□□□□ -1.85
USP38Q8NB14 AL590664.1-201ENST00000448065 339 ntBASIC3.51□□□□□ -1.85
USP38Q8NB14 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.51□□□□□ -1.85
USP38Q8NB14 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC3.51□□□□□ -1.85
USP38Q8NB14 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.51□□□□□ -1.85
USP38Q8NB14 RNU6-953P-201ENST00000459154 107 ntBASIC3.51□□□□□ -1.85
USP38Q8NB14 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC3.51□□□□□ -1.85
USP38Q8NB14 AC116562.3-201ENST00000506136 177 ntBASIC3.51□□□□□ -1.85
USP38Q8NB14 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC3.51□□□□□ -1.85
USP38Q8NB14 AC108078.2-201ENST00000510750 236 ntBASIC3.51□□□□□ -1.85
USP38Q8NB14 RN7SKP132-201ENST00000516001 208 ntBASIC3.51□□□□□ -1.85
USP38Q8NB14 SNORD59.2-201ENST00000516873 68 ntBASIC3.51□□□□□ -1.85
USP38Q8NB14 RNU6-677P-201ENST00000516914 101 ntBASIC3.51□□□□□ -1.85
USP38Q8NB14 ATP5F1P5-201ENST00000526403 760 ntBASIC3.51□□□□□ -1.85
USP38Q8NB14 AC068587.5-201ENST00000528506 175 ntBASIC3.51□□□□□ -1.85
USP38Q8NB14 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.51□□□□□ -1.85
USP38Q8NB14 TRAV28-201ENST00000557548 323 ntBASIC3.51□□□□□ -1.85
USP38Q8NB14 H3F3AP1-201ENST00000559984 334 ntBASIC3.51□□□□□ -1.85
USP38Q8NB14 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.51□□□□□ -1.85
USP38Q8NB14 AC068790.6-201ENST00000602558 258 ntBASIC3.51□□□□□ -1.85
USP38Q8NB14 AL022154.1-201ENST00000604698 785 ntBASIC3.51□□□□□ -1.85
USP38Q8NB14 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
USP38Q8NB14 AC130324.3-201ENST00000614165 542 ntBASIC3.51□□□□□ -1.85
USP38Q8NB14 AC034102.8-201ENST00000615146 484 ntBASIC3.51□□□□□ -1.85
USP38Q8NB14 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.51□□□□□ -1.85
USP38Q8NB14 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC3.51□□□□□ -1.85
USP38Q8NB14 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.51□□□□□ -1.85
USP38Q8NB14 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.51□□□□□ -1.85
USP38Q8NB14 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.51□□□□□ -1.85
USP38Q8NB14 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
USP38Q8NB14 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
USP38Q8NB14 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
USP38Q8NB14 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
USP38Q8NB14 Y_RNA.1-201ENST00000352915 104 ntBASIC3.5□□□□□ -1.85
USP38Q8NB14 RNU6-1097P-201ENST00000363586 107 ntBASIC3.5□□□□□ -1.85
USP38Q8NB14 Y_RNA.245-201ENST00000364493 95 ntBASIC3.5□□□□□ -1.85
USP38Q8NB14 RNU6-108P-201ENST00000365558 107 ntBASIC3.5□□□□□ -1.85
USP38Q8NB14 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
USP38Q8NB14 RNU6-190P-201ENST00000384154 102 ntBASIC3.5□□□□□ -1.85
USP38Q8NB14 RNU6-14P-201ENST00000384630 106 ntBASIC3.5□□□□□ -1.85
USP38Q8NB14 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
USP38Q8NB14 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.5□□□□□ -1.85
USP38Q8NB14 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.5□□□□□ -1.85
USP38Q8NB14 AC092809.3-201ENST00000415453 231 ntBASIC3.5□□□□□ -1.85
USP38Q8NB14 ZNF90P2-204ENST00000419323 1075 ntBASIC3.5□□□□□ -1.85
USP38Q8NB14 AC012498.1-201ENST00000424037 437 ntBASIC3.5□□□□□ -1.85
USP38Q8NB14 MTATP6P16-201ENST00000434543 526 ntBASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms