Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 SNORA31.22-201ENST00000517204 135 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 RNU6-840P-201ENST00000517275 65 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 AC105029.1-201ENST00000520250 669 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 AP006587.4-201ENST00000526053 529 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 SNRPGP16-201ENST00000533275 226 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 AC011611.1-201ENST00000552179 197 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 AC005668.1-201ENST00000571142 476 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 MIR4742-201ENST00000581069 85 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 AC008521.1-201ENST00000587471 187 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 AL390240.1-201ENST00000612950 384 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 RMST_7.1-201ENST00000621935 268 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 AC007998.5-201ENST00000622938 237 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 MIR4275-201ENST00000636486 87 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 TPTEP1-208ENST00000636884 213 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 AC009812.4-201ENST00000569134 1805 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 AC032011.1-201ENST00000611703 1549 ntBASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
CLIP4Q8N3C7 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 MFSD8-233ENST00000641482 4860 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 Y_RNA.100-201ENST00000363141 102 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 RNU6-1011P-201ENST00000384668 107 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 RNU6-550P-201ENST00000391057 101 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 RNU6-387P-201ENST00000411331 105 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 MTATP6P4-201ENST00000427725 675 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 RPL7L1P10-201ENST00000427790 463 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 VDAC1P3-201ENST00000434069 851 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 AC024082.2-201ENST00000434771 238 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 HMGN1P18-201ENST00000457642 277 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 SNORD105B-201ENST00000458770 79 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 RNU6-329P-201ENST00000459618 107 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 VN1R104P-201ENST00000505115 1009 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 MLLT10P2-201ENST00000506434 249 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 AC117522.3-201ENST00000507974 584 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 AC104619.4-201ENST00000510773 249 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 RN7SKP13-201ENST00000515933 244 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 RN7SKP18-201ENST00000516005 275 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 Y_RNA.665-201ENST00000516177 98 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 RNU2-58P-201ENST00000516403 183 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 RPL7P20-201ENST00000520308 745 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 AC104027.1-201ENST00000521887 300 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 AL137161.1-201ENST00000532231 390 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 MIR5583-1-201ENST00000580941 59 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 AC007687.1-201ENST00000602704 304 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 AL670379.4-201ENST00000605279 254 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 AL158032.1-201ENST00000605401 106 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 uc_338.5-201ENST00000611839 155 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 SDR42E1P2-201ENST00000614861 481 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 AC099654.10-201ENST00000640395 161 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 TPTE2P4-201ENST00000258589 1605 ntBASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CLIP4Q8N3C7 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CLIP4Q8N3C7 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CLIP4Q8N3C7 AL137003.2-201ENST00000606924 2538 ntBASIC3.16□□□□□ -1.9
CLIP4Q8N3C7 Y_RNA.126-201ENST00000363382 111 ntBASIC3.16□□□□□ -1.9
CLIP4Q8N3C7 RNU6-522P-201ENST00000364497 107 ntBASIC3.16□□□□□ -1.9
CLIP4Q8N3C7 Y_RNA.378-201ENST00000365652 113 ntBASIC3.16□□□□□ -1.9
CLIP4Q8N3C7 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CLIP4Q8N3C7 RNU6-116P-201ENST00000384042 109 ntBASIC3.16□□□□□ -1.9
CLIP4Q8N3C7 RNU6-831P-201ENST00000384548 107 ntBASIC3.16□□□□□ -1.9
CLIP4Q8N3C7 RNU4-46P-201ENST00000410818 138 ntBASIC3.16□□□□□ -1.9
CLIP4Q8N3C7 RAB9AP3-201ENST00000412737 573 ntBASIC3.16□□□□□ -1.9
CLIP4Q8N3C7 SYF2P2-201ENST00000417620 583 ntBASIC3.16□□□□□ -1.9
CLIP4Q8N3C7 ARL5AP1-201ENST00000418991 388 ntBASIC3.16□□□□□ -1.9
CLIP4Q8N3C7 CALM2P2-201ENST00000428512 440 ntBASIC3.16□□□□□ -1.9
CLIP4Q8N3C7 CYCSP4-201ENST00000429682 331 ntBASIC3.16□□□□□ -1.9
CLIP4Q8N3C7 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC3.16□□□□□ -1.9
CLIP4Q8N3C7 NEFMP1-201ENST00000443423 1006 ntBASIC3.16□□□□□ -1.9
CLIP4Q8N3C7 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms