Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 MTND5P22-201ENST00000458380 195 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 KC877373.1-201ENST00000479066 408 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 RN7SL691P-201ENST00000494487 301 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 SCARNA16.2-201ENST00000516520 172 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 RNA5SP384-201ENST00000516615 116 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 RNU6-307P-201ENST00000516743 106 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.17□□□□□ -1.74
USP53Q70EK8 RPL23AP97-201ENST00000568955 471 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 AC005899.2-201ENST00000584353 90 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC4.17□□□□□ -1.74
USP53Q70EK8 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.17□□□□□ -1.74
USP53Q70EK8 MIR6075-201ENST00000620782 95 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 AC007546.2-201ENST00000623996 360 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 AL732372.2-225ENST00000642124 456 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
USP53Q70EK8 MARK2P15-201ENST00000432204 2186 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 MTND4P1-201ENST00000457501 1466 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
USP53Q70EK8 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
USP53Q70EK8 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
USP53Q70EK8 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.16□□□□□ -1.74
USP53Q70EK8 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
USP53Q70EK8 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.16□□□□□ -1.74
USP53Q70EK8 MTND5P16-201ENST00000460269 1703 ntBASIC4.16□□□□□ -1.74
USP53Q70EK8 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
USP53Q70EK8 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.16□□□□□ -1.74
USP53Q70EK8 MIR448-201ENST00000362131 111 ntBASIC4.16□□□□□ -1.74
USP53Q70EK8 Y_RNA.2-201ENST00000362330 96 ntBASIC4.16□□□□□ -1.74
USP53Q70EK8 RNU6-600P-201ENST00000362524 99 ntBASIC4.16□□□□□ -1.74
USP53Q70EK8 RNU6-490P-201ENST00000362985 107 ntBASIC4.16□□□□□ -1.74
USP53Q70EK8 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.16□□□□□ -1.74
USP53Q70EK8 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.16□□□□□ -1.74
USP53Q70EK8 RNU6-331P-201ENST00000384724 107 ntBASIC4.16□□□□□ -1.74
USP53Q70EK8 AL096701.2-201ENST00000416920 238 ntBASIC4.16□□□□□ -1.74
USP53Q70EK8 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC4.16□□□□□ -1.74
USP53Q70EK8 AL157831.1-201ENST00000426134 473 ntBASIC4.16□□□□□ -1.74
USP53Q70EK8 CECR9-201ENST00000453421 199 ntBASIC4.16□□□□□ -1.74
USP53Q70EK8 PCMTD1P1-201ENST00000455560 355 ntBASIC4.16□□□□□ -1.74
USP53Q70EK8 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC4.16□□□□□ -1.74
USP53Q70EK8 AC018437.1-201ENST00000492214 406 ntBASIC4.16□□□□□ -1.74
USP53Q70EK8 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC4.16□□□□□ -1.74
USP53Q70EK8 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
USP53Q70EK8 RNU6-1046P-201ENST00000516538 107 ntBASIC4.16□□□□□ -1.74
USP53Q70EK8 Y_RNA.720-201ENST00000517166 92 ntBASIC4.16□□□□□ -1.74
USP53Q70EK8 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC4.16□□□□□ -1.74
USP53Q70EK8 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.16□□□□□ -1.74
USP53Q70EK8 RN7SL600P-201ENST00000581811 299 ntBASIC4.16□□□□□ -1.74
USP53Q70EK8 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC4.16□□□□□ -1.74
USP53Q70EK8 AC106900.2-201ENST00000604994 317 ntBASIC4.16□□□□□ -1.74
USP53Q70EK8 AL591516.1-201ENST00000611326 274 ntBASIC4.16□□□□□ -1.74
USP53Q70EK8 AC091925.1-201ENST00000623204 462 ntBASIC4.16□□□□□ -1.74
USP53Q70EK8 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.16□□□□□ -1.74
USP53Q70EK8 AC007785.2-201ENST00000598627 1916 ntBASIC4.16□□□□□ -1.74
USP53Q70EK8 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
USP53Q70EK8 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
USP53Q70EK8 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
USP53Q70EK8 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
USP53Q70EK8 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
USP53Q70EK8 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
USP53Q70EK8 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
USP53Q70EK8 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.74
USP53Q70EK8 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
USP53Q70EK8 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
USP53Q70EK8 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
USP53Q70EK8 SNORA31-201ENST00000362607 130 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 RNU1-14P-201ENST00000362759 152 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 Y_RNA.158-201ENST00000363651 101 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 RNU6-596P-201ENST00000365395 98 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 SNORA41-201ENST00000384675 132 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 MIR200C-201ENST00000384980 68 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 RN7SKP167-201ENST00000411047 285 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 Y_RNA.623-201ENST00000411128 95 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.15□□□□□ -1.75
USP53Q70EK8 AC243428.1-201ENST00000421099 264 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 COX6B1P7-201ENST00000430845 235 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 AL133396.1-201ENST00000432048 687 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 VDAC1P3-201ENST00000434069 851 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 Z82210.1-201ENST00000440037 231 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 DAP3P1-201ENST00000441522 278 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC4.15□□□□□ -1.75
USP53Q70EK8 FTH1P25-201ENST00000447665 469 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 AL162151.2-201ENST00000448875 158 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 AL645939.1-201ENST00000453429 797 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC4.15□□□□□ -1.75
USP53Q70EK8 RNU6-1137P-201ENST00000517073 99 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC4.15□□□□□ -1.75
USP53Q70EK8 AC025755.1-201ENST00000521306 278 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC4.15□□□□□ -1.75
USP53Q70EK8 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.15□□□□□ -1.75
USP53Q70EK8 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC4.15□□□□□ -1.75
USP53Q70EK8 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.15□□□□□ -1.75
USP53Q70EK8 MIR4680-201ENST00000580906 66 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 MIR3944-201ENST00000581277 108 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 MIR4444-1-201ENST00000581696 74 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 MIR4444-2-201ENST00000584390 74 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.15□□□□□ -1.75
USP53Q70EK8 AP000787.2-201ENST00000604432 568 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 AC007390.2-201ENST00000606229 3803 ntBASIC4.15□□□□□ -1.75
USP53Q70EK8 Z98200.1-201ENST00000607298 470 ntBASIC4.15□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 161.9 ms