Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 VN1R17P-201ENST00000472048 1090 ntBASIC3.33□□□□□ -1.88
ZNF549Q6P9A3 AC012181.1-201ENST00000479895 423 ntBASIC3.33□□□□□ -1.88
ZNF549Q6P9A3 MTCO1P29-201ENST00000496868 288 ntBASIC3.33□□□□□ -1.88
ZNF549Q6P9A3 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.33□□□□□ -1.88
ZNF549Q6P9A3 RNU6-1092P-201ENST00000516955 87 ntBASIC3.33□□□□□ -1.88
ZNF549Q6P9A3 RNU4-60P-201ENST00000517239 135 ntBASIC3.33□□□□□ -1.88
ZNF549Q6P9A3 AC007458.1-201ENST00000542812 373 ntBASIC3.33□□□□□ -1.88
ZNF549Q6P9A3 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.33□□□□□ -1.88
ZNF549Q6P9A3 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.33□□□□□ -1.88
ZNF549Q6P9A3 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.33□□□□□ -1.88
ZNF549Q6P9A3 BNIP3P22-201ENST00000593399 556 ntBASIC3.33□□□□□ -1.88
ZNF549Q6P9A3 AL390240.1-201ENST00000612950 384 ntBASIC3.33□□□□□ -1.88
ZNF549Q6P9A3 AL391261.4-201ENST00000616012 481 ntBASIC3.33□□□□□ -1.88
ZNF549Q6P9A3 uc_338.34-201ENST00000617467 174 ntBASIC3.33□□□□□ -1.88
ZNF549Q6P9A3 AC025034.2-201ENST00000623264 286 ntBASIC3.33□□□□□ -1.88
ZNF549Q6P9A3 AC006065.5-201ENST00000623427 349 ntBASIC3.33□□□□□ -1.88
ZNF549Q6P9A3 MTND4LP32-201ENST00000636111 270 ntBASIC3.33□□□□□ -1.88
ZNF549Q6P9A3 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
ZNF549Q6P9A3 PABPC1P7-201ENST00000413177 1513 ntBASIC3.33□□□□□ -1.88
ZNF549Q6P9A3 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
ZNF549Q6P9A3 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
ZNF549Q6P9A3 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.33□□□□□ -1.88
ZNF549Q6P9A3 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.33□□□□□ -1.88
ZNF549Q6P9A3 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 AC017071.1-201ENST00000564407 2204 ntBASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 MIR369-201ENST00000362155 70 ntBASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 Y_RNA.128-201ENST00000363391 112 ntBASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 MIR606-201ENST00000384851 96 ntBASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 MIR548K-201ENST00000408406 116 ntBASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 RNU6-516P-201ENST00000411381 104 ntBASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 AL159169.1-201ENST00000421119 127 ntBASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 Z82205.1-201ENST00000428456 297 ntBASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 TXNP1-201ENST00000441872 371 ntBASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 SNRPFP3-201ENST00000457792 225 ntBASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 RPL21P93-201ENST00000480465 489 ntBASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 Y_RNA.654-201ENST00000497848 106 ntBASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 AL137161.1-201ENST00000532231 390 ntBASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 AC004024.1-201ENST00000549244 247 ntBASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 AL163153.1-201ENST00000554223 283 ntBASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 MIR4429-201ENST00000580105 73 ntBASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 AC006557.5-201ENST00000603126 811 ntBASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 APOOP1-201ENST00000604695 592 ntBASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 AC124303.1-201ENST00000605703 360 ntBASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 uc_338.11-201ENST00000619132 160 ntBASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 AC090971.5-201ENST00000621102 293 ntBASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 MTCO1P24-201ENST00000515438 1558 ntBASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
ZNF549Q6P9A3 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 AC007496.3-201ENST00000624987 3443 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 RNU1-70P-201ENST00000362618 164 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 SNORA4.3-201ENST00000365564 137 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 RNU6-637P-201ENST00000384050 107 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 MIR218-2-201ENST00000385006 110 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 AL109755.1-201ENST00000401791 649 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 RPL5P18-201ENST00000406671 891 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 AC093578.1-201ENST00000415219 368 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 ARL5AP1-201ENST00000418991 388 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 RPL7P46-201ENST00000425129 740 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 GPM6BP2-201ENST00000432046 144 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 GPM6BP1-201ENST00000446387 144 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 HMGN1P18-201ENST00000457642 277 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 RPL7P43-201ENST00000478876 753 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 RPL21P13-201ENST00000488305 481 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 HMGB3P15-201ENST00000507326 574 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 FCF1P8-201ENST00000510322 597 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 RNU6-559P-201ENST00000516151 98 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 SNORA70.14-201ENST00000516205 110 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 AC100870.1-201ENST00000522035 505 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 IGKV2D-19-201ENST00000523346 262 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 MTND4P7-201ENST00000523876 130 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 AP000889.2-201ENST00000532684 490 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 CR383656.7-201ENST00000548164 174 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 NCAPGP2-201ENST00000557911 754 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 AC074050.1-201ENST00000563247 211 ntBASIC3.31□□□□□ -1.88
ZNF549Q6P9A3 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms