Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
USP39Q53GS9 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.06□□□□□ -1.76
USP39Q53GS9 PAPPA-AS1-201ENST00000445861 2450 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
USP39Q53GS9 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
USP39Q53GS9 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
USP39Q53GS9 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
USP39Q53GS9 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
USP39Q53GS9 RNU6-1287P-201ENST00000362914 107 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 Y_RNA.473-201ENST00000384333 102 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 RNU6-1060P-201ENST00000384664 107 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 RNU6-1109P-201ENST00000391187 107 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 AL391417.1-201ENST00000404100 426 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 RNU6ATAC23P-201ENST00000408448 123 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 RAC1P3-201ENST00000416129 580 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 DPH3P2-201ENST00000422618 250 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 SNAP23P1-201ENST00000433229 246 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 MTND2P29-201ENST00000438595 412 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 RPS24P13-201ENST00000442520 397 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.05□□□□□ -1.76
USP39Q53GS9 CEACAMP4-201ENST00000457676 421 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 snoU13.7-201ENST00000459220 104 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 AC116337.1-201ENST00000509680 687 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 RN7SKP277-201ENST00000516895 283 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 RNU6-798P-201ENST00000516912 103 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
USP39Q53GS9 AP004242.1-201ENST00000533701 349 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 AL133271.1-201ENST00000538229 291 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.05□□□□□ -1.76
USP39Q53GS9 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4.05□□□□□ -1.76
USP39Q53GS9 SRGNP1-201ENST00000603392 451 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 AL139395.1-201ENST00000603662 160 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 AC012443.1-201ENST00000605605 231 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 AC012603.1-201ENST00000606424 528 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 MIR6128-201ENST00000615528 109 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
USP39Q53GS9 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
USP39Q53GS9 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
USP39Q53GS9 MAPK10-253ENST00000641010 4072 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
USP39Q53GS9 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
USP39Q53GS9 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
USP39Q53GS9 ZNF734P-201ENST00000419494 1534 ntBASIC4.05□□□□□ -1.76
USP39Q53GS9 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
USP39Q53GS9 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.05□□□□□ -1.76
USP39Q53GS9 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
USP39Q53GS9 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.05□□□□□ -1.76
USP39Q53GS9 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
USP39Q53GS9 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
USP39Q53GS9 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
USP39Q53GS9 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
USP39Q53GS9 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.04□□□□□ -1.76
USP39Q53GS9 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.04□□□□□ -1.76
USP39Q53GS9 RNU6-960P-201ENST00000364056 120 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 RNA5SP97-201ENST00000365006 84 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 Y_RNA.512-201ENST00000384518 102 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 Y_RNA.556-201ENST00000384677 113 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 RNA5SP219-201ENST00000390940 113 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 SNORA3.3-201ENST00000408712 125 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 RPL30P2-201ENST00000414021 291 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 BX682237.1-201ENST00000415016 335 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 AC093578.1-201ENST00000415219 368 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 RPL7P10-201ENST00000417407 739 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC4.04□□□□□ -1.76
USP39Q53GS9 AC004552.1-201ENST00000419089 348 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 AC093106.2-201ENST00000428212 385 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 RPL23AP33-201ENST00000442301 452 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC4.04□□□□□ -1.76
USP39Q53GS9 DYNLL1P5-201ENST00000467158 270 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 RPS26P3-201ENST00000470205 348 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.04□□□□□ -1.76
USP39Q53GS9 AC090543.2-201ENST00000483963 348 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 AC004057.1-201ENST00000485827 348 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 AP001086.1-201ENST00000494882 321 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 AC116655.1-201ENST00000508324 901 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 AC026726.1-201ENST00000512859 601 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC4.04□□□□□ -1.76
USP39Q53GS9 RNU6-470P-201ENST00000515954 104 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 AC026403.1-201ENST00000518938 295 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 AC090115.3-201ENST00000553218 849 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 AL121576.1-201ENST00000556055 276 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC4.04□□□□□ -1.76
USP39Q53GS9 AL161756.2-201ENST00000604597 246 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 AC009229.3-201ENST00000608056 282 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC4.04□□□□□ -1.76
USP39Q53GS9 AC062037.2-201ENST00000610137 73 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 AC004696.1-201ENST00000614345 607 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.04□□□□□ -1.76
USP39Q53GS9 FP236240.3-201ENST00000623061 327 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.04□□□□□ -1.76
USP39Q53GS9 TEX41-300ENST00000631048 69 ntTSL 5 BASIC4.04□□□□□ -1.76
USP39Q53GS9 AL034408.1-202ENST00000636088 415 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 MTCO1P24-201ENST00000515438 1558 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
USP39Q53GS9 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.04□□□□□ -1.76
USP39Q53GS9 ZNF285B-201ENST00000561698 1767 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 AC103710.2-202ENST00000641454 2853 ntBASIC4.04□□□□□ -1.76
USP39Q53GS9 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.04□□□□□ -1.76
USP39Q53GS9 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms