Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 RN7SL283P-201ENST00000489055 303 ntBASIC3.77□□□□□ -1.81
COL4A3Q01955 AP001086.1-201ENST00000494882 321 ntBASIC3.77□□□□□ -1.81
COL4A3Q01955 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.77□□□□□ -1.81
COL4A3Q01955 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC3.77□□□□□ -1.81
COL4A3Q01955 RNU6-635P-201ENST00000516651 102 ntBASIC3.77□□□□□ -1.81
COL4A3Q01955 RNU6-1332P-201ENST00000516666 104 ntBASIC3.77□□□□□ -1.81
COL4A3Q01955 RNU6-685P-201ENST00000517088 95 ntBASIC3.77□□□□□ -1.81
COL4A3Q01955 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.77□□□□□ -1.81
COL4A3Q01955 AC103783.1-201ENST00000520506 373 ntBASIC3.77□□□□□ -1.81
COL4A3Q01955 AC026371.1-201ENST00000551867 419 ntBASIC3.77□□□□□ -1.81
COL4A3Q01955 AC090115.3-201ENST00000553218 849 ntBASIC3.77□□□□□ -1.81
COL4A3Q01955 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC3.77□□□□□ -1.81
COL4A3Q01955 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.77□□□□□ -1.81
COL4A3Q01955 SNHG22-203ENST00000617833 660 ntBASIC3.77□□□□□ -1.81
COL4A3Q01955 AC007998.5-201ENST00000622938 237 ntBASIC3.77□□□□□ -1.81
COL4A3Q01955 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC3.77□□□□□ -1.81
COL4A3Q01955 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.77□□□□□ -1.81
COL4A3Q01955 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
COL4A3Q01955 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.77□□□□□ -1.81
COL4A3Q01955 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
COL4A3Q01955 AC093849.1-201ENST00000563631 2209 ntBASIC3.76□□□□□ -1.81
COL4A3Q01955 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
COL4A3Q01955 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
COL4A3Q01955 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL4A3Q01955 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
COL4A3Q01955 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL4A3Q01955 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL4A3Q01955 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC3.76□□□□□ -1.81
COL4A3Q01955 RNA5SP50-201ENST00000363731 107 ntBASIC3.76□□□□□ -1.81
COL4A3Q01955 SMIM11P1-201ENST00000369586 178 ntBASIC3.76□□□□□ -1.81
COL4A3Q01955 Y_RNA.399-201ENST00000383955 105 ntBASIC3.76□□□□□ -1.81
COL4A3Q01955 RNU6-128P-201ENST00000383976 107 ntBASIC3.76□□□□□ -1.81
COL4A3Q01955 RNU6-701P-201ENST00000384059 107 ntBASIC3.76□□□□□ -1.81
COL4A3Q01955 RNY1P14-201ENST00000384426 108 ntBASIC3.76□□□□□ -1.81
COL4A3Q01955 AL583834.1-201ENST00000406943 343 ntBASIC3.76□□□□□ -1.81
COL4A3Q01955 AC093151.1-201ENST00000427711 313 ntBASIC3.76□□□□□ -1.81
COL4A3Q01955 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.76□□□□□ -1.81
COL4A3Q01955 FTLP19-201ENST00000433300 394 ntBASIC3.76□□□□□ -1.81
COL4A3Q01955 ELOCP18-201ENST00000434209 337 ntBASIC3.76□□□□□ -1.81
COL4A3Q01955 HMGB3P21-201ENST00000452483 547 ntBASIC3.76□□□□□ -1.81
COL4A3Q01955 snoU109.4-201ENST00000458953 143 ntBASIC3.76□□□□□ -1.81
COL4A3Q01955 AC026782.1-201ENST00000512952 449 ntBASIC3.76□□□□□ -1.81
COL4A3Q01955 RNU6-1016P-201ENST00000516689 94 ntBASIC3.76□□□□□ -1.81
COL4A3Q01955 AP000859.1-201ENST00000525536 307 ntBASIC3.76□□□□□ -1.81
COL4A3Q01955 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL4A3Q01955 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC3.76□□□□□ -1.81
COL4A3Q01955 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC3.76□□□□□ -1.81
COL4A3Q01955 AC174048.1-201ENST00000603389 144 ntBASIC3.76□□□□□ -1.81
COL4A3Q01955 AC009229.3-201ENST00000608056 282 ntBASIC3.76□□□□□ -1.81
COL4A3Q01955 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.76□□□□□ -1.81
COL4A3Q01955 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC3.76□□□□□ -1.81
COL4A3Q01955 CROT-204ENST00000442291 1993 ntTSL 5 BASIC3.76□□□□□ -1.81
COL4A3Q01955 MTCO1P24-201ENST00000515438 1558 ntBASIC3.76□□□□□ -1.81
COL4A3Q01955 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL4A3Q01955 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL4A3Q01955 MUC2-202ENST00000613187 4845 ntBASIC3.76□□□□□ -1.81
COL4A3Q01955 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL4A3Q01955 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.76□□□□□ -1.81
COL4A3Q01955 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL4A3Q01955 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL4A3Q01955 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.76□□□□□ -1.81
COL4A3Q01955 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL4A3Q01955 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL4A3Q01955 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.75□□□□□ -1.81
COL4A3Q01955 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC3.75□□□□□ -1.81
COL4A3Q01955 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL4A3Q01955 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL4A3Q01955 RNA5SP126-201ENST00000365092 109 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 Y_RNA.455-201ENST00000384230 98 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.75□□□□□ -1.81
COL4A3Q01955 OOSP1P1-201ENST00000423265 274 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.75□□□□□ -1.81
COL4A3Q01955 AC008267.5-201ENST00000424928 265 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.75□□□□□ -1.81
COL4A3Q01955 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.75□□□□□ -1.81
COL4A3Q01955 Z75741.1-201ENST00000446793 314 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 AC234775.1-201ENST00000454247 670 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 AC025445.1-201ENST00000502728 300 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.75□□□□□ -1.81
COL4A3Q01955 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.75□□□□□ -1.81
COL4A3Q01955 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.75□□□□□ -1.81
COL4A3Q01955 AC005798.1-201ENST00000513715 387 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 Y_RNA.670-201ENST00000516255 105 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.75□□□□□ -1.81
COL4A3Q01955 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.75□□□□□ -1.81
COL4A3Q01955 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.75□□□□□ -1.81
COL4A3Q01955 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
COL4A3Q01955 AC006077.1-201ENST00000604746 343 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 AC018462.2-201ENST00000605375 395 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 U4.6-201ENST00000621618 127 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL4A3Q01955 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
COL4A3Q01955 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL4A3Q01955 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
COL4A3Q01955 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL4A3Q01955 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL4A3Q01955 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.75□□□□□ -1.81
COL4A3Q01955 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.75□□□□□ -1.81
COL4A3Q01955 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL4A3Q01955 STK31-205ENST00000433467 3085 ntTSL 2 BASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms