Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 Y_RNA.276-201ENST00000364732 109 ntBASIC4.26□□□□□ -1.73
RNF4P78317 Y_RNA.376-201ENST00000365638 108 ntBASIC4.26□□□□□ -1.73
RNF4P78317 RNU6-1181P-201ENST00000384191 106 ntBASIC4.26□□□□□ -1.73
RNF4P78317 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.26□□□□□ -1.73
RNF4P78317 RNU6-700P-201ENST00000391043 107 ntBASIC4.26□□□□□ -1.73
RNF4P78317 SAR1AP2-201ENST00000392696 594 ntBASIC4.26□□□□□ -1.73
RNF4P78317 SDHCP2-201ENST00000398565 501 ntBASIC4.26□□□□□ -1.73
RNF4P78317 AC009237.10-201ENST00000414112 510 ntBASIC4.26□□□□□ -1.73
RNF4P78317 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC4.26□□□□□ -1.73
RNF4P78317 RPL36AP10-201ENST00000421785 322 ntBASIC4.26□□□□□ -1.73
RNF4P78317 EIF4EP2-201ENST00000422816 654 ntBASIC4.26□□□□□ -1.73
RNF4P78317 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC4.26□□□□□ -1.73
RNF4P78317 AC069285.2-201ENST00000440210 275 ntBASIC4.26□□□□□ -1.73
RNF4P78317 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
RNF4P78317 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC4.26□□□□□ -1.73
RNF4P78317 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.26□□□□□ -1.73
RNF4P78317 ISCUP1-201ENST00000454451 448 ntBASIC4.26□□□□□ -1.73
RNF4P78317 RNU6-1132P-201ENST00000459214 107 ntBASIC4.26□□□□□ -1.73
RNF4P78317 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC4.26□□□□□ -1.73
RNF4P78317 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.26□□□□□ -1.73
RNF4P78317 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.26□□□□□ -1.73
RNF4P78317 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC4.26□□□□□ -1.73
RNF4P78317 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC4.26□□□□□ -1.73
RNF4P78317 SNORA70.16-201ENST00000516390 95 ntBASIC4.26□□□□□ -1.73
RNF4P78317 RNU6-572P-201ENST00000516724 80 ntBASIC4.26□□□□□ -1.73
RNF4P78317 ATP5F1P5-201ENST00000526403 760 ntBASIC4.26□□□□□ -1.73
RNF4P78317 AL390123.1-201ENST00000603216 237 ntBASIC4.26□□□□□ -1.73
RNF4P78317 MIR6748-201ENST00000610433 71 ntBASIC4.26□□□□□ -1.73
RNF4P78317 MIR8076-201ENST00000611401 83 ntBASIC4.26□□□□□ -1.73
RNF4P78317 MIR8069-1-201ENST00000616627 86 ntBASIC4.26□□□□□ -1.73
RNF4P78317 AL731566.2-201ENST00000618971 317 ntBASIC4.26□□□□□ -1.73
RNF4P78317 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC4.26□□□□□ -1.73
RNF4P78317 MIR8069-2-201ENST00000621412 86 ntBASIC4.26□□□□□ -1.73
RNF4P78317 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
RNF4P78317 AC125257.1-201ENST00000560400 2930 ntBASIC4.26□□□□□ -1.73
RNF4P78317 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
RNF4P78317 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
RNF4P78317 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
RNF4P78317 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
RNF4P78317 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.25□□□□□ -1.73
RNF4P78317 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.25□□□□□ -1.73
RNF4P78317 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
RNF4P78317 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
RNF4P78317 Y_RNA.19-201ENST00000362462 99 ntBASIC4.25□□□□□ -1.73
RNF4P78317 RNU1-83P-201ENST00000363426 164 ntBASIC4.25□□□□□ -1.73
RNF4P78317 Y_RNA.350-201ENST00000365409 98 ntBASIC4.25□□□□□ -1.73
RNF4P78317 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.25□□□□□ -1.73
RNF4P78317 RNU6-708P-201ENST00000384217 107 ntBASIC4.25□□□□□ -1.73
RNF4P78317 RNU6-166P-201ENST00000384371 107 ntBASIC4.25□□□□□ -1.73
RNF4P78317 Y_RNA.526-201ENST00000384572 110 ntBASIC4.25□□□□□ -1.73
RNF4P78317 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
RNF4P78317 SNORA69.1-201ENST00000390904 137 ntBASIC4.25□□□□□ -1.73
RNF4P78317 SNORA40C-201ENST00000391285 128 ntBASIC4.25□□□□□ -1.73
RNF4P78317 RNA5SP494-201ENST00000410653 129 ntBASIC4.25□□□□□ -1.73
RNF4P78317 RNA5SP146-201ENST00000410743 123 ntBASIC4.25□□□□□ -1.73
RNF4P78317 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.25□□□□□ -1.73
RNF4P78317 AC068287.1-201ENST00000430283 295 ntBASIC4.25□□□□□ -1.73
RNF4P78317 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC4.25□□□□□ -1.73
RNF4P78317 HIGD1AP2-201ENST00000446367 280 ntBASIC4.25□□□□□ -1.73
RNF4P78317 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.25□□□□□ -1.73
RNF4P78317 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
RNF4P78317 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.25□□□□□ -1.73
RNF4P78317 AL645939.1-201ENST00000453429 797 ntBASIC4.25□□□□□ -1.73
RNF4P78317 RPL23AP24-201ENST00000458203 385 ntBASIC4.25□□□□□ -1.73
RNF4P78317 RNU6-612P-201ENST00000516909 102 ntBASIC4.25□□□□□ -1.73
RNF4P78317 RNU6-570P-201ENST00000517051 105 ntBASIC4.25□□□□□ -1.73
RNF4P78317 RNU6-897P-201ENST00000517135 105 ntBASIC4.25□□□□□ -1.73
RNF4P78317 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
RNF4P78317 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.25□□□□□ -1.73
RNF4P78317 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC4.25□□□□□ -1.73
RNF4P78317 AC209154.1-201ENST00000582156 337 ntBASIC4.25□□□□□ -1.73
RNF4P78317 RPS29P30-201ENST00000600975 111 ntBASIC4.25□□□□□ -1.73
RNF4P78317 AC006557.5-201ENST00000603126 811 ntBASIC4.25□□□□□ -1.73
RNF4P78317 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.25□□□□□ -1.73
RNF4P78317 AL159153.1-201ENST00000619688 317 ntBASIC4.25□□□□□ -1.73
RNF4P78317 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.25□□□□□ -1.73
RNF4P78317 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
RNF4P78317 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
RNF4P78317 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.25□□□□□ -1.73
RNF4P78317 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.25□□□□□ -1.73
RNF4P78317 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.24□□□□□ -1.73
RNF4P78317 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
RNF4P78317 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
RNF4P78317 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.24□□□□□ -1.73
RNF4P78317 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC4.24□□□□□ -1.73
RNF4P78317 Y_RNA.60-201ENST00000362831 98 ntBASIC4.24□□□□□ -1.73
RNF4P78317 RNU6-770P-201ENST00000363929 105 ntBASIC4.24□□□□□ -1.73
RNF4P78317 RNU6-741P-201ENST00000383889 107 ntBASIC4.24□□□□□ -1.73
RNF4P78317 SNORA56-201ENST00000383966 129 ntBASIC4.24□□□□□ -1.73
RNF4P78317 Y_RNA.471-201ENST00000384312 102 ntBASIC4.24□□□□□ -1.73
RNF4P78317 Y_RNA.477-201ENST00000384352 108 ntBASIC4.24□□□□□ -1.73
RNF4P78317 MIR3074-201ENST00000384885 81 ntBASIC4.24□□□□□ -1.73
RNF4P78317 AL160275.2-201ENST00000412010 394 ntBASIC4.24□□□□□ -1.73
RNF4P78317 RAC1P3-201ENST00000416129 580 ntBASIC4.24□□□□□ -1.73
RNF4P78317 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC4.24□□□□□ -1.73
RNF4P78317 RPL17P36-201ENST00000420302 549 ntBASIC4.24□□□□□ -1.73
RNF4P78317 RPL23AP1-201ENST00000428990 471 ntBASIC4.24□□□□□ -1.73
RNF4P78317 MTCO3P29-201ENST00000432119 779 ntBASIC4.24□□□□□ -1.73
RNF4P78317 ANP32BP2-201ENST00000454525 545 ntBASIC4.24□□□□□ -1.73
RNF4P78317 SNORD127-201ENST00000458892 86 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms