Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC1.73□□□□□ -2.13
FOXA1P55317 RPL35AP22-201ENST00000436855 335 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC1.73□□□□□ -2.13
FOXA1P55317 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC1.73□□□□□ -2.13
FOXA1P55317 FGF7P5-201ENST00000441829 291 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 TPT1P14-201ENST00000448018 505 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 MTCO1P27-201ENST00000448269 226 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 AP000542.1-201ENST00000448473 371 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC1.73□□□□□ -2.13
FOXA1P55317 WDR78-207ENST00000488333 613 ntTSL 3 BASIC1.73□□□□□ -2.13
FOXA1P55317 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC1.73□□□□□ -2.13
FOXA1P55317 AC093281.2-201ENST00000510153 597 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 OR5AQ1P-201ENST00000527596 927 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 AC023538.1-201ENST00000534576 736 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC1.73□□□□□ -2.13
FOXA1P55317 AC110588.1-201ENST00000559699 137 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 AC087465.1-201ENST00000560574 245 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 AC135628.1-201ENST00000568867 534 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 AC060771.1-201ENST00000582031 164 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 AC002545.1-201ENST00000592511 181 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 AL596327.1-201ENST00000603629 213 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 AL357094.1-201ENST00000603845 844 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC1.73□□□□□ -2.13
FOXA1P55317 SDR42E1P2-201ENST00000614861 481 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC1.73□□□□□ -2.13
FOXA1P55317 AC012640.5-201ENST00000623897 319 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
FOXA1P55317 CR848007.1-201ENST00000442354 1699 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 MTND5P29-201ENST00000458676 1807 ntBASIC1.73□□□□□ -2.13
FOXA1P55317 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.72□□□□□ -2.13
FOXA1P55317 AL359851.1-201ENST00000569460 4997 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 HSPA8P4-201ENST00000511877 1920 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 SNORD114-1-201ENST00000362705 72 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 RN7SKP226-201ENST00000364912 300 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
FOXA1P55317 GSTA9P-201ENST00000406231 611 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 MIR320C1-201ENST00000408566 88 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 AL356379.1-201ENST00000414105 126 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 AL445685.2-201ENST00000422551 342 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 AC098614.2-201ENST00000426040 255 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC1.72□□□□□ -2.13
FOXA1P55317 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC1.72□□□□□ -2.13
FOXA1P55317 HMGN2P3-201ENST00000433603 273 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC1.72□□□□□ -2.13
FOXA1P55317 HMGN2P5-201ENST00000436882 273 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 AL117351.1-201ENST00000438864 766 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC1.72□□□□□ -2.13
FOXA1P55317 ZNF736P1Y-201ENST00000440402 1276 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 GPM6BP3-201ENST00000442797 145 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 PTENP1-201ENST00000447117 1215 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC1.72□□□□□ -2.13
FOXA1P55317 RPL12P25-201ENST00000455592 494 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 snoU13.23-201ENST00000458863 104 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 Y_RNA.638-201ENST00000459374 113 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 RPL7P18-201ENST00000478965 734 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 RPS15AP36-201ENST00000492022 382 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC1.72□□□□□ -2.13
FOXA1P55317 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC1.72□□□□□ -2.13
FOXA1P55317 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC1.72□□□□□ -2.13
FOXA1P55317 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC1.72□□□□□ -2.13
FOXA1P55317 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC1.72□□□□□ -2.13
FOXA1P55317 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC1.72□□□□□ -2.13
FOXA1P55317 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC1.72□□□□□ -2.13
FOXA1P55317 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC1.72□□□□□ -2.13
FOXA1P55317 RANP3-201ENST00000530970 276 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 CYCSP26-201ENST00000534107 320 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC1.72□□□□□ -2.13
FOXA1P55317 GLYCAM1-201ENST00000546596 285 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 AC022662.1-201ENST00000580252 331 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 MIR3117-201ENST00000584034 78 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 AF038458.1-201ENST00000588406 262 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 MTND4LP5-201ENST00000605152 292 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 AL391834.2-201ENST00000609982 546 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 FTX_3.1-201ENST00000610451 147 ntBASIC1.72□□□□□ -2.13
FOXA1P55317 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC1.72□□□□□ -2.13
FOXA1P55317 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC1.72□□□□□ -2.13
FOXA1P55317 RNU6-223P-201ENST00000362830 107 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 RNU6-461P-201ENST00000364195 107 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC1.71□□□□□ -2.14
FOXA1P55317 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
FOXA1P55317 RNU6-636P-201ENST00000384598 107 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 MIR764-201ENST00000390811 85 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 MIR1294-201ENST00000408503 142 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 MTCO1P17-201ENST00000411522 491 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.71□□□□□ -2.14
FOXA1P55317 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC1.71□□□□□ -2.14
FOXA1P55317 AC083875.1-201ENST00000419509 405 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 TXNL1P1-201ENST00000429528 554 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC1.71□□□□□ -2.14
FOXA1P55317 AL591806.2-201ENST00000433122 173 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 USP9YP24-201ENST00000434374 697 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC1.71□□□□□ -2.14
FOXA1P55317 Z80107.1-201ENST00000436830 412 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 RSU1P2-202ENST00000437884 485 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 AL445687.1-201ENST00000439946 251 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 MTCO3P45-201ENST00000443036 613 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 USP9YP17-201ENST00000444617 696 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC1.71□□□□□ -2.14
FOXA1P55317 USP9YP25-201ENST00000457708 443 ntBASIC1.71□□□□□ -2.14
FOXA1P55317 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 133.2 ms