Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RAC1P6-201ENST00000423911 575 ntBASIC3.02□□□□□ -1.93
MSH3P20585 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC3.02□□□□□ -1.93
MSH3P20585 RPL21P40-201ENST00000428586 483 ntBASIC3.02□□□□□ -1.93
MSH3P20585 RPL36AP6-201ENST00000435770 321 ntBASIC3.02□□□□□ -1.93
MSH3P20585 AC020550.1-201ENST00000447385 163 ntBASIC3.02□□□□□ -1.93
MSH3P20585 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.02□□□□□ -1.93
MSH3P20585 RN7SL432P-201ENST00000484057 298 ntBASIC3.02□□□□□ -1.93
MSH3P20585 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC3.02□□□□□ -1.93
MSH3P20585 GMPSP1-201ENST00000514075 579 ntBASIC3.02□□□□□ -1.93
MSH3P20585 AC008885.1-201ENST00000514930 301 ntBASIC3.02□□□□□ -1.93
MSH3P20585 Y_RNA.704-201ENST00000516851 102 ntBASIC3.02□□□□□ -1.93
MSH3P20585 RNU6-840P-201ENST00000517275 65 ntBASIC3.02□□□□□ -1.93
MSH3P20585 AP006587.4-201ENST00000526053 529 ntBASIC3.02□□□□□ -1.93
MSH3P20585 OR4R1P-201ENST00000529879 463 ntBASIC3.02□□□□□ -1.93
MSH3P20585 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
MSH3P20585 RPS3AP4-201ENST00000555161 764 ntBASIC3.02□□□□□ -1.93
MSH3P20585 AL512360.1-201ENST00000555346 234 ntBASIC3.02□□□□□ -1.93
MSH3P20585 AC025678.1-201ENST00000567861 338 ntBASIC3.02□□□□□ -1.93
MSH3P20585 MIR3921-201ENST00000577308 85 ntBASIC3.02□□□□□ -1.93
MSH3P20585 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.02□□□□□ -1.93
MSH3P20585 AL670379.6-201ENST00000603753 252 ntBASIC3.02□□□□□ -1.93
MSH3P20585 AL670379.11-201ENST00000604059 253 ntBASIC3.02□□□□□ -1.93
MSH3P20585 AC008162.1-201ENST00000604718 254 ntBASIC3.02□□□□□ -1.93
MSH3P20585 AL670379.1-201ENST00000604752 252 ntBASIC3.02□□□□□ -1.93
MSH3P20585 AL670379.5-201ENST00000605253 252 ntBASIC3.02□□□□□ -1.93
MSH3P20585 AL670379.12-201ENST00000605291 253 ntBASIC3.02□□□□□ -1.93
MSH3P20585 AL670379.8-201ENST00000605353 252 ntBASIC3.02□□□□□ -1.93
MSH3P20585 AL670379.7-201ENST00000605823 252 ntBASIC3.02□□□□□ -1.93
MSH3P20585 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.02□□□□□ -1.93
MSH3P20585 AL162274.2-201ENST00000614406 332 ntBASIC3.02□□□□□ -1.93
MSH3P20585 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.02□□□□□ -1.93
MSH3P20585 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.02□□□□□ -1.93
MSH3P20585 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC3.02□□□□□ -1.93
MSH3P20585 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.02□□□□□ -1.93
MSH3P20585 API5P2-201ENST00000397055 1498 ntBASIC3.02□□□□□ -1.93
MSH3P20585 AL353743.1-202ENST00000431724 1695 ntBASIC3.01□□□□□ -1.93
MSH3P20585 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.01□□□□□ -1.93
MSH3P20585 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
MSH3P20585 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.01□□□□□ -1.93
MSH3P20585 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
MSH3P20585 Y_RNA.248-201ENST00000364501 109 ntBASIC3.01□□□□□ -1.93
MSH3P20585 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
MSH3P20585 Y_RNA.402-201ENST00000383972 102 ntBASIC3.01□□□□□ -1.93
MSH3P20585 RNU6-641P-201ENST00000384006 107 ntBASIC3.01□□□□□ -1.93
MSH3P20585 RNU6-701P-201ENST00000384059 107 ntBASIC3.01□□□□□ -1.93
MSH3P20585 MIR491-201ENST00000384877 84 ntBASIC3.01□□□□□ -1.93
MSH3P20585 AL138885.1-201ENST00000405921 675 ntBASIC3.01□□□□□ -1.93
MSH3P20585 RPL5P18-201ENST00000406671 891 ntBASIC3.01□□□□□ -1.93
MSH3P20585 RNU2-9P-201ENST00000410194 145 ntBASIC3.01□□□□□ -1.93
MSH3P20585 RN7SKP123-201ENST00000410732 291 ntBASIC3.01□□□□□ -1.93
MSH3P20585 AC093106.2-201ENST00000428212 385 ntBASIC3.01□□□□□ -1.93
MSH3P20585 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC3.01□□□□□ -1.93
MSH3P20585 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.01□□□□□ -1.93
MSH3P20585 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC3.01□□□□□ -1.93
MSH3P20585 AL671855.1-201ENST00000446875 1203 ntBASIC3.01□□□□□ -1.93
MSH3P20585 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.01□□□□□ -1.93
MSH3P20585 AC027673.1-201ENST00000456245 405 ntBASIC3.01□□□□□ -1.93
MSH3P20585 RN7SL20P-201ENST00000488827 297 ntBASIC3.01□□□□□ -1.93
MSH3P20585 AC117522.1-201ENST00000509821 380 ntBASIC3.01□□□□□ -1.93
MSH3P20585 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC3.01□□□□□ -1.93
MSH3P20585 NRON-201ENST00000517270 370 ntBASIC3.01□□□□□ -1.93
MSH3P20585 PSMA2P1-201ENST00000526365 646 ntBASIC3.01□□□□□ -1.93
MSH3P20585 AC022690.1-201ENST00000526681 550 ntBASIC3.01□□□□□ -1.93
MSH3P20585 AP001646.1-201ENST00000527936 915 ntBASIC3.01□□□□□ -1.93
MSH3P20585 AP002404.1-201ENST00000532005 451 ntBASIC3.01□□□□□ -1.93
MSH3P20585 AL157687.1-201ENST00000554853 619 ntBASIC3.01□□□□□ -1.93
MSH3P20585 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.01□□□□□ -1.93
MSH3P20585 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.01□□□□□ -1.93
MSH3P20585 AP005205.1-201ENST00000563503 508 ntBASIC3.01□□□□□ -1.93
MSH3P20585 HMGB1P6-201ENST00000569046 646 ntBASIC3.01□□□□□ -1.93
MSH3P20585 AC024619.4-201ENST00000580924 316 ntBASIC3.01□□□□□ -1.93
MSH3P20585 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC3.01□□□□□ -1.93
MSH3P20585 RBM11P1-201ENST00000604951 799 ntBASIC3.01□□□□□ -1.93
MSH3P20585 AC007014.2-201ENST00000615581 479 ntBASIC3.01□□□□□ -1.93
MSH3P20585 AC068831.7-201ENST00000616954 363 ntBASIC3.01□□□□□ -1.93
MSH3P20585 MIR3688-2-201ENST00000636963 87 ntBASIC3.01□□□□□ -1.93
MSH3P20585 MIR1321-201ENST00000637766 79 ntBASIC3.01□□□□□ -1.93
MSH3P20585 SDAD1P2-201ENST00000441308 2028 ntBASIC3.01□□□□□ -1.93
MSH3P20585 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.01□□□□□ -1.93
MSH3P20585 AC009487.2-201ENST00000420969 6821 ntBASIC3.01□□□□□ -1.93
MSH3P20585 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.01□□□□□ -1.93
MSH3P20585 AL035425.3-201ENST00000564206 4996 ntBASIC3□□□□□ -1.93
MSH3P20585 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
MSH3P20585 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3□□□□□ -1.93
MSH3P20585 RNU6-1322P-201ENST00000364309 107 ntBASIC3□□□□□ -1.93
MSH3P20585 Y_RNA.256-201ENST00000364594 104 ntBASIC3□□□□□ -1.93
MSH3P20585 RNU4-48P-201ENST00000365559 182 ntBASIC3□□□□□ -1.93
MSH3P20585 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3□□□□□ -1.93
MSH3P20585 RNU6-483P-201ENST00000384088 108 ntBASIC3□□□□□ -1.93
MSH3P20585 RNU6-606P-201ENST00000384721 111 ntBASIC3□□□□□ -1.93
MSH3P20585 MIR514A1-201ENST00000385133 98 ntBASIC3□□□□□ -1.93
MSH3P20585 RNU6-1158P-201ENST00000391167 107 ntBASIC3□□□□□ -1.93
MSH3P20585 RNU1-101P-201ENST00000391171 127 ntBASIC3□□□□□ -1.93
MSH3P20585 NDUFS5P1-201ENST00000405668 289 ntBASIC3□□□□□ -1.93
MSH3P20585 RN7SKP220-201ENST00000410611 288 ntBASIC3□□□□□ -1.93
MSH3P20585 RN7SKP140-201ENST00000411196 284 ntBASIC3□□□□□ -1.93
MSH3P20585 AC114491.1-201ENST00000416095 246 ntBASIC3□□□□□ -1.93
MSH3P20585 ZNF90P2-204ENST00000419323 1075 ntBASIC3□□□□□ -1.93
MSH3P20585 AC022018.1-201ENST00000430685 241 ntBASIC3□□□□□ -1.93
MSH3P20585 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms