Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RNU1-75P-201ENST00000347264 129 ntBASIC4□□□□□ -1.77
HMGB1P09429 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC4□□□□□ -1.77
HMGB1P09429 SNORA73.2-201ENST00000364946 201 ntBASIC4□□□□□ -1.77
HMGB1P09429 PTMAP2-201ENST00000397627 327 ntBASIC4□□□□□ -1.77
HMGB1P09429 AC093578.1-201ENST00000415219 368 ntBASIC4□□□□□ -1.77
HMGB1P09429 MTCO3P30-201ENST00000426425 670 ntBASIC4□□□□□ -1.77
HMGB1P09429 AL353706.1-201ENST00000436728 494 ntBASIC4□□□□□ -1.77
HMGB1P09429 RPL21P133-201ENST00000443666 476 ntBASIC4□□□□□ -1.77
HMGB1P09429 AC025518.1-201ENST00000479856 347 ntBASIC4□□□□□ -1.77
HMGB1P09429 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC4□□□□□ -1.77
HMGB1P09429 IGKV2-26-201ENST00000518305 343 ntBASIC4□□□□□ -1.77
HMGB1P09429 PSMA2P1-201ENST00000526365 646 ntBASIC4□□□□□ -1.77
HMGB1P09429 AC012213.3-201ENST00000577199 777 ntBASIC4□□□□□ -1.77
HMGB1P09429 AC087045.1-201ENST00000605856 382 ntBASIC4□□□□□ -1.77
HMGB1P09429 AC069294.1-201ENST00000608397 350 ntBASIC4□□□□□ -1.77
HMGB1P09429 AL356321.1-201ENST00000621360 228 ntBASIC4□□□□□ -1.77
HMGB1P09429 AC138649.3-201ENST00000622154 254 ntBASIC4□□□□□ -1.77
HMGB1P09429 AL359740.1-201ENST00000624340 592 ntBASIC4□□□□□ -1.77
HMGB1P09429 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
HMGB1P09429 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.99□□□□□ -1.77
HMGB1P09429 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.99□□□□□ -1.77
HMGB1P09429 RNU4-35P-201ENST00000362588 141 ntBASIC3.99□□□□□ -1.77
HMGB1P09429 RNU6-486P-201ENST00000363116 107 ntBASIC3.99□□□□□ -1.77
HMGB1P09429 SNORA38-201ENST00000363946 132 ntBASIC3.99□□□□□ -1.77
HMGB1P09429 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
HMGB1P09429 AP002088.1-201ENST00000382740 395 ntBASIC3.99□□□□□ -1.77
HMGB1P09429 Y_RNA.576-201ENST00000384781 102 ntBASIC3.99□□□□□ -1.77
HMGB1P09429 MIR578-201ENST00000384828 96 ntBASIC3.99□□□□□ -1.77
HMGB1P09429 MIR10A-201ENST00000385043 110 ntBASIC3.99□□□□□ -1.77
HMGB1P09429 MIR134-201ENST00000385258 73 ntBASIC3.99□□□□□ -1.77
HMGB1P09429 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
HMGB1P09429 FTH1P15-201ENST00000406984 280 ntBASIC3.99□□□□□ -1.77
HMGB1P09429 MIR1302-8-201ENST00000408342 128 ntBASIC3.99□□□□□ -1.77
HMGB1P09429 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.99□□□□□ -1.77
HMGB1P09429 RNU6-248P-201ENST00000410720 107 ntBASIC3.99□□□□□ -1.77
HMGB1P09429 RPS29P4-201ENST00000414733 161 ntBASIC3.99□□□□□ -1.77
HMGB1P09429 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC3.99□□□□□ -1.77
HMGB1P09429 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.99□□□□□ -1.77
HMGB1P09429 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.99□□□□□ -1.77
HMGB1P09429 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.99□□□□□ -1.77
HMGB1P09429 MICF-203ENST00000432679 129 ntBASIC3.99□□□□□ -1.77
HMGB1P09429 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.99□□□□□ -1.77
HMGB1P09429 RPS12P18-201ENST00000442381 270 ntBASIC3.99□□□□□ -1.77
HMGB1P09429 AP000936.2-201ENST00000447151 681 ntBASIC3.99□□□□□ -1.77
HMGB1P09429 AC012308.1-201ENST00000451232 178 ntBASIC3.99□□□□□ -1.77
HMGB1P09429 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
HMGB1P09429 AC104806.1-201ENST00000508720 308 ntBASIC3.99□□□□□ -1.77
HMGB1P09429 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC3.99□□□□□ -1.77
HMGB1P09429 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.99□□□□□ -1.77
HMGB1P09429 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC3.99□□□□□ -1.77
HMGB1P09429 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC3.99□□□□□ -1.77
HMGB1P09429 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC3.99□□□□□ -1.77
HMGB1P09429 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.99□□□□□ -1.77
HMGB1P09429 AC234778.2-201ENST00000566241 354 ntBASIC3.99□□□□□ -1.77
HMGB1P09429 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.99□□□□□ -1.77
HMGB1P09429 HMGB1P24-202ENST00000615653 685 ntBASIC3.99□□□□□ -1.77
HMGB1P09429 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC3.99□□□□□ -1.77
HMGB1P09429 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.99□□□□□ -1.77
HMGB1P09429 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
HMGB1P09429 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
HMGB1P09429 Z75746.1-201ENST00000440243 2080 ntBASIC3.98□□□□□ -1.77
HMGB1P09429 SNORA62.1-201ENST00000364287 154 ntBASIC3.98□□□□□ -1.77
HMGB1P09429 Y_RNA.367-201ENST00000365544 101 ntBASIC3.98□□□□□ -1.77
HMGB1P09429 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HMGB1P09429 AC090960.1-201ENST00000421072 306 ntBASIC3.98□□□□□ -1.77
HMGB1P09429 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC3.98□□□□□ -1.77
HMGB1P09429 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.98□□□□□ -1.77
HMGB1P09429 AC112771.1-201ENST00000463581 102 ntBASIC3.98□□□□□ -1.77
HMGB1P09429 AC096576.1-201ENST00000489014 359 ntBASIC3.98□□□□□ -1.77
HMGB1P09429 AC006445.1-201ENST00000491925 405 ntBASIC3.98□□□□□ -1.77
HMGB1P09429 AC010486.3-201ENST00000511602 785 ntBASIC3.98□□□□□ -1.77
HMGB1P09429 SAP18P1-201ENST00000512058 390 ntBASIC3.98□□□□□ -1.77
HMGB1P09429 AC114781.4-201ENST00000513707 639 ntBASIC3.98□□□□□ -1.77
HMGB1P09429 NDUFB9P3-201ENST00000521269 501 ntBASIC3.98□□□□□ -1.77
HMGB1P09429 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
HMGB1P09429 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC3.98□□□□□ -1.77
HMGB1P09429 AL670379.10-201ENST00000604330 253 ntBASIC3.98□□□□□ -1.77
HMGB1P09429 AL670379.9-201ENST00000605428 253 ntBASIC3.98□□□□□ -1.77
HMGB1P09429 AL158063.1-201ENST00000615349 536 ntBASIC3.98□□□□□ -1.77
HMGB1P09429 AC092656.1-203ENST00000624134 423 ntBASIC3.98□□□□□ -1.77
HMGB1P09429 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.98□□□□□ -1.77
HMGB1P09429 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.97□□□□□ -1.77
HMGB1P09429 ELL2P3-201ENST00000457883 1602 ntBASIC3.97□□□□□ -1.77
HMGB1P09429 VTRNA1-1-201ENST00000363120 99 ntBASIC3.97□□□□□ -1.77
HMGB1P09429 RNU6-116P-201ENST00000384042 109 ntBASIC3.97□□□□□ -1.77
HMGB1P09429 RN7SKP123-201ENST00000410732 291 ntBASIC3.97□□□□□ -1.77
HMGB1P09429 RNU6-387P-201ENST00000411331 105 ntBASIC3.97□□□□□ -1.77
HMGB1P09429 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.97□□□□□ -1.77
HMGB1P09429 MTND3P17-201ENST00000416968 344 ntBASIC3.97□□□□□ -1.77
HMGB1P09429 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.97□□□□□ -1.77
HMGB1P09429 AL627311.1-201ENST00000431514 115 ntBASIC3.97□□□□□ -1.77
HMGB1P09429 BX679664.1-201ENST00000434429 253 ntBASIC3.97□□□□□ -1.77
HMGB1P09429 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC3.97□□□□□ -1.77
HMGB1P09429 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC3.97□□□□□ -1.77
HMGB1P09429 KATNBL1P3-201ENST00000443475 909 ntBASIC3.97□□□□□ -1.77
HMGB1P09429 RPL21P41-201ENST00000459863 264 ntBASIC3.97□□□□□ -1.77
HMGB1P09429 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.97□□□□□ -1.77
HMGB1P09429 MRPL42P6-201ENST00000486397 371 ntBASIC3.97□□□□□ -1.77
HMGB1P09429 AC098799.2-201ENST00000509466 868 ntBASIC3.97□□□□□ -1.77
HMGB1P09429 SMURF2P1-201ENST00000514992 481 ntBASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 186 ms