Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 ELL2P3-201ENST00000457883 1602 ntBASIC0.64□□□□□ -2.31
SPTA1P02549 AC245060.5-201ENST00000610778 3293 ntBASIC0.64□□□□□ -2.31
SPTA1P02549 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.64□□□□□ -2.31
SPTA1P02549 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC0.64□□□□□ -2.31
SPTA1P02549 RNU1-105P-201ENST00000363470 161 ntBASIC0.64□□□□□ -2.31
SPTA1P02549 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC0.64□□□□□ -2.31
SPTA1P02549 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC0.64□□□□□ -2.31
SPTA1P02549 LAMTOR3P1-201ENST00000428620 370 ntBASIC0.64□□□□□ -2.31
SPTA1P02549 Z80107.1-201ENST00000436830 412 ntBASIC0.64□□□□□ -2.31
SPTA1P02549 AC073614.1-201ENST00000438690 650 ntBASIC0.64□□□□□ -2.31
SPTA1P02549 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC0.64□□□□□ -2.31
SPTA1P02549 RPS24P6-201ENST00000452670 400 ntBASIC0.64□□□□□ -2.31
SPTA1P02549 AC087879.1-201ENST00000474343 374 ntBASIC0.64□□□□□ -2.31
SPTA1P02549 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC0.64□□□□□ -2.31
SPTA1P02549 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC0.64□□□□□ -2.31
SPTA1P02549 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC0.64□□□□□ -2.31
SPTA1P02549 RNU5F-8P-201ENST00000515941 111 ntBASIC0.64□□□□□ -2.31
SPTA1P02549 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC0.64□□□□□ -2.31
SPTA1P02549 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC0.64□□□□□ -2.31
SPTA1P02549 AC015849.6-201ENST00000605454 474 ntBASIC0.64□□□□□ -2.31
SPTA1P02549 UCA1.1-201ENST00000620952 75 ntBASIC0.64□□□□□ -2.31
SPTA1P02549 AC096656.1-201ENST00000623826 1364 ntBASIC0.64□□□□□ -2.31
SPTA1P02549 RNU6-697P-201ENST00000363348 107 ntBASIC0.64□□□□□ -2.31
SPTA1P02549 RNU6-263P-201ENST00000363811 107 ntBASIC0.64□□□□□ -2.31
SPTA1P02549 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC0.64□□□□□ -2.31
SPTA1P02549 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.64□□□□□ -2.31
SPTA1P02549 TRIM60P3Y-201ENST00000432201 673 ntBASIC0.64□□□□□ -2.31
SPTA1P02549 AL645638.1-201ENST00000440519 361 ntBASIC0.64□□□□□ -2.31
SPTA1P02549 AC118469.1-201ENST00000442943 488 ntBASIC0.64□□□□□ -2.31
SPTA1P02549 RPS15AP27-201ENST00000449183 343 ntBASIC0.64□□□□□ -2.31
SPTA1P02549 MTND4LP3-201ENST00000468320 276 ntBASIC0.64□□□□□ -2.31
SPTA1P02549 SETP11-201ENST00000473027 690 ntBASIC0.64□□□□□ -2.31
SPTA1P02549 TRBVB-201ENST00000477100 408 ntBASIC0.64□□□□□ -2.31
SPTA1P02549 SNORA31.8-201ENST00000516327 108 ntBASIC0.64□□□□□ -2.31
SPTA1P02549 MTCYBP23-201ENST00000558717 1102 ntBASIC0.64□□□□□ -2.31
SPTA1P02549 AC106028.5-201ENST00000610332 395 ntBASIC0.64□□□□□ -2.31
SPTA1P02549 AC068050.1-201ENST00000394891 380 ntBASIC0.63□□□□□ -2.31
SPTA1P02549 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC0.63□□□□□ -2.31
SPTA1P02549 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC0.63□□□□□ -2.31
SPTA1P02549 SSXP4-201ENST00000451349 245 ntBASIC0.63□□□□□ -2.31
SPTA1P02549 KLF3P2-201ENST00000465138 268 ntBASIC0.63□□□□□ -2.31
SPTA1P02549 NUTF2P8-201ENST00000604593 363 ntBASIC0.63□□□□□ -2.31
SPTA1P02549 MTND5P11-201ENST00000511037 1812 ntBASIC0.63□□□□□ -2.31
SPTA1P02549 SNORA16B-201ENST00000364674 135 ntBASIC0.63□□□□□ -2.31
SPTA1P02549 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC0.63□□□□□ -2.31
SPTA1P02549 RNU2-21P-201ENST00000410368 188 ntBASIC0.63□□□□□ -2.31
SPTA1P02549 MTCYBP24-201ENST00000420387 1106 ntBASIC0.63□□□□□ -2.31
SPTA1P02549 USP12PX-201ENST00000432383 1057 ntBASIC0.63□□□□□ -2.31
SPTA1P02549 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC0.63□□□□□ -2.31
SPTA1P02549 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC0.63□□□□□ -2.31
SPTA1P02549 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC0.63□□□□□ -2.31
SPTA1P02549 AC121161.1-201ENST00000510606 652 ntBASIC0.63□□□□□ -2.31
SPTA1P02549 RNU6-970P-201ENST00000516312 107 ntBASIC0.63□□□□□ -2.31
SPTA1P02549 SNORA48.10-201ENST00000516965 160 ntBASIC0.63□□□□□ -2.31
SPTA1P02549 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC0.63□□□□□ -2.31
SPTA1P02549 AC004923.2-201ENST00000529649 369 ntBASIC0.63□□□□□ -2.31
SPTA1P02549 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC0.63□□□□□ -2.31
SPTA1P02549 AC118273.2-201ENST00000532092 465 ntBASIC0.63□□□□□ -2.31
SPTA1P02549 AC084033.1-201ENST00000550830 633 ntBASIC0.63□□□□□ -2.31
SPTA1P02549 MIR4698-201ENST00000577795 80 ntBASIC0.63□□□□□ -2.31
SPTA1P02549 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC0.63□□□□□ -2.31
SPTA1P02549 AC090666.1-201ENST00000578241 445 ntBASIC0.63□□□□□ -2.31
SPTA1P02549 UBE2L4-201ENST00000587688 464 ntBASIC0.63□□□□□ -2.31
SPTA1P02549 AL096840.1-201ENST00000603287 93 ntBASIC0.63□□□□□ -2.31
SPTA1P02549 AL078605.1-201ENST00000603529 500 ntBASIC0.63□□□□□ -2.31
SPTA1P02549 AC113194.1-201ENST00000606037 500 ntBASIC0.63□□□□□ -2.31
SPTA1P02549 AC027309.3-201ENST00000623419 351 ntBASIC0.63□□□□□ -2.31
SPTA1P02549 OR4G3P-201ENST00000633500 913 ntBASIC0.63□□□□□ -2.31
SPTA1P02549 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC0.62□□□□□ -2.31
SPTA1P02549 RNU6-317P-201ENST00000384031 107 ntBASIC0.62□□□□□ -2.31
SPTA1P02549 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC0.62□□□□□ -2.31
SPTA1P02549 TRAPPC2P4-201ENST00000421750 331 ntBASIC0.62□□□□□ -2.31
SPTA1P02549 MTCO1P3-201ENST00000429327 192 ntBASIC0.62□□□□□ -2.31
SPTA1P02549 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC0.62□□□□□ -2.31
SPTA1P02549 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC0.62□□□□□ -2.31
SPTA1P02549 AC112518.2-201ENST00000508565 425 ntBASIC0.62□□□□□ -2.31
SPTA1P02549 MRPS36P2-201ENST00000512569 299 ntBASIC0.62□□□□□ -2.31
SPTA1P02549 RNU6-319P-201ENST00000516025 108 ntBASIC0.62□□□□□ -2.31
SPTA1P02549 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC0.62□□□□□ -2.31
SPTA1P02549 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC0.62□□□□□ -2.31
SPTA1P02549 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC0.62□□□□□ -2.31
SPTA1P02549 MED28P6-201ENST00000558776 231 ntBASIC0.62□□□□□ -2.31
SPTA1P02549 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC0.62□□□□□ -2.31
SPTA1P02549 AC106900.2-201ENST00000604994 317 ntBASIC0.62□□□□□ -2.31
SPTA1P02549 AC107214.2-201ENST00000608204 634 ntBASIC0.62□□□□□ -2.31
SPTA1P02549 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC0.62□□□□□ -2.31
SPTA1P02549 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC0.62□□□□□ -2.31
SPTA1P02549 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC0.62□□□□□ -2.31
SPTA1P02549 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC0.62□□□□□ -2.31
SPTA1P02549 RNU6-43P-201ENST00000384302 107 ntBASIC0.62□□□□□ -2.31
SPTA1P02549 AC093157.2-201ENST00000414686 671 ntTSL 5 BASIC0.62□□□□□ -2.31
SPTA1P02549 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC0.62□□□□□ -2.31
SPTA1P02549 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC0.62□□□□□ -2.31
SPTA1P02549 RNU6-229P-201ENST00000516614 102 ntBASIC0.62□□□□□ -2.31
SPTA1P02549 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
SPTA1P02549 AC090616.3-201ENST00000582184 217 ntBASIC0.62□□□□□ -2.31
SPTA1P02549 AL050343.2-201ENST00000607338 280 ntBASIC0.62□□□□□ -2.31
SPTA1P02549 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC0.61□□□□□ -2.31
SPTA1P02549 RNA5SP299-201ENST00000391203 116 ntBASIC0.61□□□□□ -2.31
SPTA1P02549 RNA5SP63-201ENST00000391225 112 ntBASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms