Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 RNU6-378P-201ENST00000384324 107 ntBASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 RNA5SP36-201ENST00000410197 133 ntBASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 RNU6-293P-201ENST00000411259 106 ntBASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 C4BPAP2-201ENST00000428434 478 ntBASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 RN7SL98P-201ENST00000462271 300 ntBASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 PLGLA-201ENST00000465668 449 ntBASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 FTH1P2-201ENST00000466086 412 ntBASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 AC087884.1-201ENST00000469738 328 ntBASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 RPS29P22-201ENST00000472363 168 ntBASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 RN7SL810P-201ENST00000493031 276 ntBASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 RNU6-685P-201ENST00000517088 95 ntBASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 AC008521.1-201ENST00000587471 187 ntBASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 AC140479.6-201ENST00000633535 357 ntBASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 MIR6715B-201ENST00000637172 77 ntBASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
CCDC39Q9UFE4 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 PAPPA-AS1-201ENST00000445861 2450 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 RNU6-960P-201ENST00000364056 120 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 RNY3P11-201ENST00000364153 102 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 RNU6-48P-201ENST00000384161 107 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 RNU6-1081P-201ENST00000384537 107 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 Y_RNA.577-201ENST00000384794 101 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 AL138885.1-201ENST00000405921 675 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 RNU6-1156P-201ENST00000410365 100 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 RPL7P2-201ENST00000427639 268 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 AC093106.2-201ENST00000428212 385 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 CALM2P2-201ENST00000428512 440 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 PSMA2P3-201ENST00000429685 675 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 AL136126.1-201ENST00000473603 402 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 RPL17P19-201ENST00000489069 552 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 RNA5SP143-201ENST00000516936 115 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 RANP3-201ENST00000530970 276 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 AC006064.5-201ENST00000541782 248 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 AP002770.2-201ENST00000543613 532 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 AL133153.1-201ENST00000557756 303 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 AC006600.1-201ENST00000572529 153 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 AC007448.1-201ENST00000582714 234 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 MIR4715-201ENST00000584117 79 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 AC012669.1-201ENST00000603209 283 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 AP001282.2-201ENST00000616149 309 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 AL159153.1-201ENST00000619688 317 ntBASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CCDC39Q9UFE4 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
CCDC39Q9UFE4 AC130650.2-201ENST00000618736 2403 ntBASIC4.84□□□□□ -1.64
CCDC39Q9UFE4 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.84□□□□□ -1.64
CCDC39Q9UFE4 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
CCDC39Q9UFE4 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 Y_RNA.65-201ENST00000362846 100 ntBASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 Y_RNA.105-201ENST00000363182 111 ntBASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 RNU6-1243P-201ENST00000364028 107 ntBASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 SNORA51.11-201ENST00000384442 131 ntBASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 Y_RNA.526-201ENST00000384572 110 ntBASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 SNORD58.1-201ENST00000391313 66 ntBASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 RNU2-33P-201ENST00000410344 192 ntBASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 RNU6-1140P-201ENST00000410517 106 ntBASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 RPL21P38-201ENST00000418090 167 ntBASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 OR2AQ1P-201ENST00000451972 200 ntBASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 RPL23AP81-201ENST00000455252 467 ntBASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 OARD1-209ENST00000471367 401 ntTSL 2 BASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 AC093767.1-201ENST00000504523 156 ntBASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 RN7SKP277-201ENST00000516895 283 ntBASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 RNU6-1092P-201ENST00000516955 87 ntBASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 RNU6-64P-201ENST00000517119 105 ntBASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 AC109446.1-201ENST00000566172 220 ntBASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 AC234771.5-201ENST00000600161 514 ntBASIC4.83□□□□□ -1.64
CCDC39Q9UFE4 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 136.4 ms