Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC2.58□□□□□ -2
LHX3Q9UBR4 UBE2DNL-203ENST00000474922 222 ntBASIC2.58□□□□□ -2
LHX3Q9UBR4 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.58□□□□□ -2
LHX3Q9UBR4 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC2.58□□□□□ -2
LHX3Q9UBR4 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC2.58□□□□□ -2
LHX3Q9UBR4 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.58□□□□□ -2
LHX3Q9UBR4 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.58□□□□□ -2
LHX3Q9UBR4 RNU2-10P-201ENST00000516375 211 ntBASIC2.58□□□□□ -2
LHX3Q9UBR4 RNA5SP148-201ENST00000516527 94 ntBASIC2.58□□□□□ -2
LHX3Q9UBR4 RNU6-56P-201ENST00000516986 93 ntBASIC2.58□□□□□ -2
LHX3Q9UBR4 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.58□□□□□ -2
LHX3Q9UBR4 AC106038.2-201ENST00000520706 568 ntBASIC2.58□□□□□ -2
LHX3Q9UBR4 CKS1BP7-201ENST00000522230 235 ntBASIC2.58□□□□□ -2
LHX3Q9UBR4 AC011979.2-201ENST00000527568 352 ntBASIC2.58□□□□□ -2
LHX3Q9UBR4 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC2.58□□□□□ -2
LHX3Q9UBR4 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC2.58□□□□□ -2
LHX3Q9UBR4 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC2.58□□□□□ -2
LHX3Q9UBR4 ARL2BPP2-201ENST00000550907 489 ntBASIC2.58□□□□□ -2
LHX3Q9UBR4 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.58□□□□□ -2
LHX3Q9UBR4 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.58□□□□□ -2
LHX3Q9UBR4 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.58□□□□□ -2
LHX3Q9UBR4 AC010546.1-201ENST00000569391 485 ntBASIC2.58□□□□□ -2
LHX3Q9UBR4 MIR3915-201ENST00000578518 97 ntBASIC2.58□□□□□ -2
LHX3Q9UBR4 AC092354.1-201ENST00000606057 376 ntBASIC2.58□□□□□ -2
LHX3Q9UBR4 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
LHX3Q9UBR4 AL603755.1-201ENST00000619504 163 ntBASIC2.58□□□□□ -2
LHX3Q9UBR4 AC009878.1-201ENST00000621819 340 ntBASIC2.58□□□□□ -2
LHX3Q9UBR4 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.58□□□□□ -2
LHX3Q9UBR4 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.58□□□□□ -2
LHX3Q9UBR4 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.58□□□□□ -2
LHX3Q9UBR4 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC2.58□□□□□ -2
LHX3Q9UBR4 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
LHX3Q9UBR4 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.58□□□□□ -2
LHX3Q9UBR4 ATP8A2P3-201ENST00000426792 1536 ntBASIC2.58□□□□□ -2
LHX3Q9UBR4 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.57□□□□□ -2
LHX3Q9UBR4 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
LHX3Q9UBR4 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.57□□□□□ -2
LHX3Q9UBR4 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.57□□□□□ -2
LHX3Q9UBR4 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.57□□□□□ -2
LHX3Q9UBR4 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC2.57□□□□□ -2
LHX3Q9UBR4 RNU6-511P-201ENST00000363496 107 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 MIR518C-201ENST00000384822 101 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 NDUFS5P4-201ENST00000412983 318 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 AC080125.1-201ENST00000414888 684 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 AL513477.1-202ENST00000417061 214 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.57□□□□□ -2
LHX3Q9UBR4 SEPT2P1-201ENST00000419651 180 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 AC098614.2-201ENST00000426040 255 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC2.57□□□□□ -2
LHX3Q9UBR4 RPS6P15-201ENST00000431996 751 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 AC236972.1-201ENST00000433225 199 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 RPS15AP5-201ENST00000436276 388 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 MTND1P26-201ENST00000440488 538 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 MTND4P25-201ENST00000441039 533 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 Z96811.1-201ENST00000445880 108 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 ST13P20-201ENST00000447996 1065 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 USP9YP12-201ENST00000450481 570 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 FABP5P15-201ENST00000453566 214 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC2.57□□□□□ -2
LHX3Q9UBR4 AL590639.1-201ENST00000456484 337 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 AC113155.1-201ENST00000511141 769 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.57□□□□□ -2
LHX3Q9UBR4 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.57□□□□□ -2
LHX3Q9UBR4 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.57□□□□□ -2
LHX3Q9UBR4 MRPS36P5-201ENST00000551909 298 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 NACAP3-201ENST00000552100 481 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.57□□□□□ -2
LHX3Q9UBR4 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.57□□□□□ -2
LHX3Q9UBR4 AC023043.3-201ENST00000593113 385 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 AC104763.2-201ENST00000604179 382 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 AL031775.1-201ENST00000607014 887 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 AC103710.2-201ENST00000609912 942 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 AC138749.5-201ENST00000611461 208 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 AC025594.3-201ENST00000613068 790 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 AC116165.2-201ENST00000616705 206 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 AC092140.2-201ENST00000618027 521 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 AC091931.1-201ENST00000623488 728 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 MIR6733-201ENST00000635723 61 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 U2.21-201ENST00000637295 81 ntBASIC2.57□□□□□ -2
LHX3Q9UBR4 AL137003.2-201ENST00000606924 2538 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 MIR27B-201ENST00000385129 97 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 RNU6-817P-201ENST00000391083 104 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
LHX3Q9UBR4 AF228730.1-201ENST00000397972 663 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 MRPL42P2-201ENST00000403169 426 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 AC023141.4-201ENST00000412031 328 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 AC107081.1-201ENST00000414975 361 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 BPY2DP-201ENST00000422208 265 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 AC092447.3-201ENST00000426027 686 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC2.56□□□□□ -2
LHX3Q9UBR4 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.56□□□□□ -2
LHX3Q9UBR4 HMGB1P9-201ENST00000429856 646 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 RPL36AP53-201ENST00000432891 316 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 SETP8-201ENST00000435341 628 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.56□□□□□ -2
LHX3Q9UBR4 UBE2D3P4-201ENST00000441973 436 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC2.56□□□□□ -2
LHX3Q9UBR4 AC009296.1-201ENST00000443146 155 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 COX6CP2-201ENST00000444980 225 ntBASIC2.56□□□□□ -2
LHX3Q9UBR4 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms