Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 MIR7153-201ENST00000637758 57 ntBASIC3.8□□□□□ -1.8
DKK3Q9UBP4 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
DKK3Q9UBP4 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
DKK3Q9UBP4 API5P2-201ENST00000397055 1498 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.79□□□□□ -1.8
DKK3Q9UBP4 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
DKK3Q9UBP4 RNU6-82P-201ENST00000363970 107 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 RNA5SP72-201ENST00000364442 117 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.79□□□□□ -1.8
DKK3Q9UBP4 Y_RNA.431-201ENST00000384086 102 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 Y_RNA.474-201ENST00000384341 102 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 Y_RNA.530-201ENST00000384587 101 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 Y_RNA.576-201ENST00000384781 102 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
DKK3Q9UBP4 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
DKK3Q9UBP4 AL583834.1-201ENST00000406943 343 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 RNU4-46P-201ENST00000410818 138 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 HSPE1P1-201ENST00000421494 318 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 CALM2P2-201ENST00000428512 440 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 AC090774.1-201ENST00000435925 246 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 HMGN2P20-201ENST00000437531 273 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 AL121871.1-201ENST00000443413 436 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
DKK3Q9UBP4 AC233279.1-201ENST00000455300 423 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.79□□□□□ -1.8
DKK3Q9UBP4 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC3.79□□□□□ -1.8
DKK3Q9UBP4 RAC1P2-201ENST00000511164 579 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 TTC39CP1-201ENST00000512513 755 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.79□□□□□ -1.8
DKK3Q9UBP4 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC3.79□□□□□ -1.8
DKK3Q9UBP4 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.79□□□□□ -1.8
DKK3Q9UBP4 HPRT1P3-201ENST00000539521 576 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.79□□□□□ -1.8
DKK3Q9UBP4 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.79□□□□□ -1.8
DKK3Q9UBP4 SCOCP1-201ENST00000554676 349 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC3.79□□□□□ -1.8
DKK3Q9UBP4 MIR4513-201ENST00000581077 86 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 AC104237.2-201ENST00000612456 443 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.79□□□□□ -1.8
DKK3Q9UBP4 uc_338.34-201ENST00000617467 174 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 AL160413.1-201ENST00000622780 310 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 MIR1302-1-201ENST00000637932 143 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
DKK3Q9UBP4 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
DKK3Q9UBP4 AC121333.1-201ENST00000567488 2709 ntBASIC3.79□□□□□ -1.8
DKK3Q9UBP4 AC093908.1-201ENST00000623125 8092 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.78□□□□□ -1.8
DKK3Q9UBP4 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
DKK3Q9UBP4 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.78□□□□□ -1.8
DKK3Q9UBP4 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.78□□□□□ -1.8
DKK3Q9UBP4 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
DKK3Q9UBP4 DEFB109C-201ENST00000382575 264 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 DEFB109B-201ENST00000382656 264 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 RNU6-1227P-201ENST00000383981 107 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 AL592114.1-201ENST00000403842 483 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 RNU2-43P-201ENST00000410306 190 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 RAB9AP3-201ENST00000412737 573 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.78□□□□□ -1.8
DKK3Q9UBP4 AL451054.2-201ENST00000420896 202 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 RPL7P46-201ENST00000425129 740 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.78□□□□□ -1.8
DKK3Q9UBP4 AC004866.2-201ENST00000438285 481 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 RAB9AP1-201ENST00000449393 573 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC3.78□□□□□ -1.8
DKK3Q9UBP4 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.78□□□□□ -1.8
DKK3Q9UBP4 RNU6-1208P-201ENST00000459588 107 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 AC010285.1-201ENST00000470580 392 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC3.78□□□□□ -1.8
DKK3Q9UBP4 AC010631.1-201ENST00000474150 156 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.78□□□□□ -1.8
DKK3Q9UBP4 AC104806.1-201ENST00000508720 308 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 AC108078.2-201ENST00000510750 236 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC3.78□□□□□ -1.8
DKK3Q9UBP4 RNU6-685P-201ENST00000517088 95 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 RPL7P20-201ENST00000520308 745 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.78□□□□□ -1.8
DKK3Q9UBP4 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.78□□□□□ -1.8
DKK3Q9UBP4 AC093012.1-202ENST00000549403 582 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 AC012182.1-201ENST00000570133 895 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 AC005498.1-201ENST00000592125 465 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 AC174048.1-201ENST00000603389 144 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 AL390240.1-201ENST00000612950 384 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 AL450472.3-201ENST00000615578 367 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
DKK3Q9UBP4 AL357559.1-201ENST00000622228 274 ntBASIC3.78□□□□□ -1.8
DKK3Q9UBP4 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.78□□□□□ -1.8
DKK3Q9UBP4 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
DKK3Q9UBP4 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
DKK3Q9UBP4 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.78□□□□□ -1.8
DKK3Q9UBP4 TPTE2P4-201ENST00000258589 1605 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.77□□□□□ -1.81
DKK3Q9UBP4 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
DKK3Q9UBP4 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.77□□□□□ -1.81
DKK3Q9UBP4 RNA5SP124-201ENST00000362739 110 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 Y_RNA.167-201ENST00000363735 109 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 Y_RNA.184-201ENST00000363884 108 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 SNORA23-201ENST00000365128 182 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 RNA5SP235-201ENST00000365411 114 ntBASIC3.77□□□□□ -1.81
DKK3Q9UBP4 SMIM11P1-201ENST00000369586 178 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms