Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.64□□□□□ -1.99
DDX28Q9NUL7 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.64□□□□□ -1.99
DDX28Q9NUL7 RN7SL297P-201ENST00000483161 293 ntBASIC2.64□□□□□ -1.99
DDX28Q9NUL7 RPL39P36-201ENST00000490784 156 ntBASIC2.64□□□□□ -1.99
DDX28Q9NUL7 AC006445.1-201ENST00000491925 405 ntBASIC2.64□□□□□ -1.99
DDX28Q9NUL7 AC010587.1-201ENST00000505809 469 ntBASIC2.64□□□□□ -1.99
DDX28Q9NUL7 TBCAP3-201ENST00000512475 312 ntBASIC2.64□□□□□ -1.99
DDX28Q9NUL7 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.64□□□□□ -1.99
DDX28Q9NUL7 RNU6-1092P-201ENST00000516955 87 ntBASIC2.64□□□□□ -1.99
DDX28Q9NUL7 RNA5SP337-201ENST00000517007 109 ntBASIC2.64□□□□□ -1.99
DDX28Q9NUL7 VBP1-203ENST00000535916 944 ntTSL 2 BASIC2.64□□□□□ -1.99
DDX28Q9NUL7 APAF1-207ENST00000547743 651 ntTSL 3 BASIC2.64□□□□□ -1.99
DDX28Q9NUL7 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC2.64□□□□□ -1.99
DDX28Q9NUL7 RPL21P5-201ENST00000554662 472 ntBASIC2.64□□□□□ -1.99
DDX28Q9NUL7 AC025281.1-201ENST00000567026 265 ntBASIC2.64□□□□□ -1.99
DDX28Q9NUL7 MIR5194-201ENST00000582634 120 ntBASIC2.64□□□□□ -1.99
DDX28Q9NUL7 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC2.64□□□□□ -1.99
DDX28Q9NUL7 AC104763.2-201ENST00000604179 382 ntBASIC2.64□□□□□ -1.99
DDX28Q9NUL7 AC007363.1-201ENST00000604736 620 ntBASIC2.64□□□□□ -1.99
DDX28Q9NUL7 AL035413.2-201ENST00000604801 525 ntBASIC2.64□□□□□ -1.99
DDX28Q9NUL7 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC2.64□□□□□ -1.99
DDX28Q9NUL7 AC007318.2-201ENST00000620999 243 ntBASIC2.64□□□□□ -1.99
DDX28Q9NUL7 AC026422.1-201ENST00000623961 452 ntBASIC2.64□□□□□ -1.99
DDX28Q9NUL7 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC2.64□□□□□ -1.99
DDX28Q9NUL7 AC019226.2-201ENST00000625973 424 ntBASIC2.64□□□□□ -1.99
DDX28Q9NUL7 U2.21-201ENST00000637295 81 ntBASIC2.64□□□□□ -1.99
DDX28Q9NUL7 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.64□□□□□ -1.99
DDX28Q9NUL7 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.64□□□□□ -1.99
DDX28Q9NUL7 SNORA5B-201ENST00000363786 132 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 RNU4-1-201ENST00000363925 141 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 SNORA54-201ENST00000384281 123 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 Y_RNA.510-201ENST00000384511 114 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 MT-TH-201ENST00000387441 69 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
DDX28Q9NUL7 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.63□□□□□ -1.99
DDX28Q9NUL7 AC022018.1-201ENST00000430685 241 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 GTF2IP20-201ENST00000431663 360 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 CETN4P-201ENST00000432407 469 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 AC119618.1-201ENST00000434191 222 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.63□□□□□ -1.99
DDX28Q9NUL7 MTND4P25-201ENST00000441039 533 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 TAF9P1-201ENST00000445421 515 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC2.63□□□□□ -1.99
DDX28Q9NUL7 TAF9P2-201ENST00000454958 515 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.63□□□□□ -1.99
DDX28Q9NUL7 RPS29P20-201ENST00000489592 171 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC2.63□□□□□ -1.99
DDX28Q9NUL7 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC2.63□□□□□ -1.99
DDX28Q9NUL7 RPL23AP94-201ENST00000512518 302 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.63□□□□□ -1.99
DDX28Q9NUL7 AC022634.1-201ENST00000520765 532 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 NACAP3-201ENST00000552100 481 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 MTND3P12-201ENST00000559068 328 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 H3F3AP1-201ENST00000559984 334 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC2.63□□□□□ -1.99
DDX28Q9NUL7 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.63□□□□□ -1.99
DDX28Q9NUL7 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC2.63□□□□□ -1.99
DDX28Q9NUL7 HMGN1P30-201ENST00000589286 268 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 AL356575.1-201ENST00000603008 283 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 AL365204.3-201ENST00000612448 685 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 DUSP12P1-201ENST00000612874 516 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 AC108479.2-201ENST00000617314 601 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.63□□□□□ -1.99
DDX28Q9NUL7 Z99129.2-201ENST00000619967 314 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 UCA1.1-201ENST00000620952 75 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 AL589994.2-201ENST00000621124 579 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 AL137790.1-201ENST00000634283 177 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 AC099654.13-201ENST00000639774 207 ntBASIC2.63□□□□□ -1.99
DDX28Q9NUL7 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
DDX28Q9NUL7 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.63□□□□□ -1.99
DDX28Q9NUL7 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.63□□□□□ -1.99
DDX28Q9NUL7 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
DDX28Q9NUL7 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.62□□□□□ -1.99
DDX28Q9NUL7 HSPE1P11-201ENST00000339579 310 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 MIR22-201ENST00000362190 85 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 RNU4-21P-201ENST00000362802 126 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 RNU6-778P-201ENST00000363269 103 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 SMIM11P1-201ENST00000369586 178 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 RNU1-73P-201ENST00000383971 164 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC2.62□□□□□ -1.99
DDX28Q9NUL7 RNU2-8P-201ENST00000410727 190 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.62□□□□□ -1.99
DDX28Q9NUL7 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC2.62□□□□□ -1.99
DDX28Q9NUL7 BPY2DP-201ENST00000422208 265 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 RPL35AP12-201ENST00000425362 338 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 AL358075.3-201ENST00000426289 226 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 AL589872.1-201ENST00000426602 288 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 HMGB1P9-201ENST00000429856 646 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 USP9YP15-201ENST00000442391 422 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 RPS15AP27-201ENST00000449183 343 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.62□□□□□ -1.99
DDX28Q9NUL7 AC027673.1-201ENST00000456245 405 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 AC117440.1-201ENST00000474107 571 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 RPL23AP70-201ENST00000483361 460 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 AC097462.2-201ENST00000504623 481 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 NDUFB4P2-201ENST00000509515 391 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC2.62□□□□□ -1.99
DDX28Q9NUL7 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC2.62□□□□□ -1.99
DDX28Q9NUL7 Y_RNA.672-201ENST00000516289 104 ntBASIC2.62□□□□□ -1.99
DDX28Q9NUL7 RNU6-143P-201ENST00000516942 93 ntBASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 139.4 ms