Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 AC084781.2-201ENST00000615568 161 ntBASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
PCIF1Q9H4Z3 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 AC006504.1-201ENST00000562493 3666 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 ANKRD26P2-201ENST00000445530 1710 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 AC018529.3-201ENST00000624212 2254 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 RNU6-266P-201ENST00000364225 107 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 AL360182.1-201ENST00000397433 468 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 HLFP1-201ENST00000402375 499 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 RN7SKP156-201ENST00000410308 342 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 NDUFB4P7-201ENST00000423198 363 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 RPL7P37-201ENST00000425095 738 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 ATP5HP2-201ENST00000433885 485 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 RPS20P22-201ENST00000473700 357 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 HMGB3P15-201ENST00000507326 574 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 AC005741.1-201ENST00000511094 432 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 SNORA70.16-201ENST00000516390 95 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 RNU6-1332P-201ENST00000516666 104 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 CYCSP27-201ENST00000527643 293 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 AC020661.2-201ENST00000560114 134 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 MIR548AC-201ENST00000585049 88 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 AC124303.1-201ENST00000605703 360 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 AL133215.3-201ENST00000609801 448 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 Y_RNA.812-201ENST00000610788 101 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 Y_RNA.784-201ENST00000613803 101 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 Y_RNA.787-201ENST00000616522 101 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 Y_RNA.780-201ENST00000617336 101 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 Y_RNA.801-201ENST00000619005 101 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 AC090971.5-201ENST00000621102 293 ntBASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
PCIF1Q9H4Z3 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 RNU6-562P-201ENST00000362731 107 ntBASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 RN7SKP44-201ENST00000363602 316 ntBASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 SNORD42.2-201ENST00000365570 69 ntBASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 AL590632.1-201ENST00000424289 371 ntBASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 AL353729.1-201ENST00000425044 720 ntBASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 RNU7-152P-201ENST00000458982 64 ntBASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 MTND3P25-201ENST00000509243 135 ntBASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 RNU6-1315P-201ENST00000517187 99 ntBASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 RGS4-209ENST00000531057 544 ntTSL 4 BASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 AC006270.2-201ENST00000578523 652 ntBASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 AP002826.1-201ENST00000608835 315 ntBASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 AC005344.1-201ENST00000613391 459 ntBASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 MIR4727-201ENST00000622232 55 ntBASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 AC112200.1-201ENST00000625015 234 ntBASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.12□□□□□ -1.75
PCIF1Q9H4Z3 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 MFSD8-236ENST00000641509 4050 ntBASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 RNU6-600P-201ENST00000362524 99 ntBASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 Y_RNA.126-201ENST00000363382 111 ntBASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 MIR607-201ENST00000385241 96 ntBASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 AL590004.1-201ENST00000405321 300 ntBASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 RPL21P66-201ENST00000426566 466 ntBASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 AL591419.1-201ENST00000427423 339 ntBASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 RPL23AP69-201ENST00000431134 458 ntBASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 Y_RNA.639-201ENST00000458981 102 ntBASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC4.11□□□□□ -1.75
PCIF1Q9H4Z3 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 146.9 ms