Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SKA1Q96BD8 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
SKA1Q96BD8 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SKA1Q96BD8 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SKA1Q96BD8 U3.4-201ENST00000363352 213 ntBASIC3.29□□□□□ -1.88
SKA1Q96BD8 AL138885.1-201ENST00000405921 675 ntBASIC3.29□□□□□ -1.88
SKA1Q96BD8 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.29□□□□□ -1.88
SKA1Q96BD8 AC092809.3-201ENST00000415453 231 ntBASIC3.29□□□□□ -1.88
SKA1Q96BD8 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.29□□□□□ -1.88
SKA1Q96BD8 AC093151.1-201ENST00000427711 313 ntBASIC3.29□□□□□ -1.88
SKA1Q96BD8 MTND1P26-201ENST00000440488 538 ntBASIC3.29□□□□□ -1.88
SKA1Q96BD8 AL671855.1-201ENST00000446875 1203 ntBASIC3.29□□□□□ -1.88
SKA1Q96BD8 AC003071.1-201ENST00000451219 789 ntBASIC3.29□□□□□ -1.88
SKA1Q96BD8 SNORD42A-201ENST00000459584 64 ntBASIC3.29□□□□□ -1.88
SKA1Q96BD8 RN7SL75P-201ENST00000461926 281 ntBASIC3.29□□□□□ -1.88
SKA1Q96BD8 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.29□□□□□ -1.88
SKA1Q96BD8 AC022616.3-201ENST00000523940 148 ntBASIC3.29□□□□□ -1.88
SKA1Q96BD8 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.29□□□□□ -1.88
SKA1Q96BD8 AP002404.1-201ENST00000532005 451 ntBASIC3.29□□□□□ -1.88
SKA1Q96BD8 AC006199.1-201ENST00000548728 219 ntBASIC3.29□□□□□ -1.88
SKA1Q96BD8 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.29□□□□□ -1.88
SKA1Q96BD8 CLIC4P2-201ENST00000601934 717 ntBASIC3.29□□□□□ -1.88
SKA1Q96BD8 MIR15A-201ENST00000607334 83 ntBASIC3.29□□□□□ -1.88
SKA1Q96BD8 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
SKA1Q96BD8 SNORD39.4-201ENST00000620099 78 ntBASIC3.29□□□□□ -1.88
SKA1Q96BD8 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
SKA1Q96BD8 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.28□□□□□ -1.88
SKA1Q96BD8 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SKA1Q96BD8 MIR422A-201ENST00000362286 90 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 RNA5SP374-201ENST00000362939 125 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 RNU6-7-201ENST00000364784 107 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 RNU1-140P-201ENST00000365040 165 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 RNU6-8-201ENST00000365467 107 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SKA1Q96BD8 MIR887-201ENST00000401258 79 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC3.28□□□□□ -1.88
SKA1Q96BD8 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.28□□□□□ -1.88
SKA1Q96BD8 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC3.28□□□□□ -1.88
SKA1Q96BD8 AC104850.1-201ENST00000435940 476 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 AC073614.1-201ENST00000438690 650 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 RPS15AP7-201ENST00000439294 405 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 DPPA3P1-201ENST00000448050 469 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 NIPA2P5-201ENST00000452282 464 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 OARD1-209ENST00000471367 401 ntTSL 2 BASIC3.28□□□□□ -1.88
SKA1Q96BD8 RAP1BP2-201ENST00000478270 544 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.28□□□□□ -1.88
SKA1Q96BD8 RPL23AP70-201ENST00000483361 460 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC3.28□□□□□ -1.88
SKA1Q96BD8 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.28□□□□□ -1.88
SKA1Q96BD8 RNU5F-8P-201ENST00000515941 111 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 RNU6-1183P-201ENST00000517054 60 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.28□□□□□ -1.88
SKA1Q96BD8 OR5B19P-201ENST00000531766 928 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 AC007536.1-201ENST00000533382 349 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC3.28□□□□□ -1.88
SKA1Q96BD8 ADI1P3-201ENST00000549509 470 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 AC087883.1-201ENST00000551882 391 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC3.28□□□□□ -1.88
SKA1Q96BD8 AL157871.3-201ENST00000557231 293 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 MIR1273C-201ENST00000578669 77 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.28□□□□□ -1.88
SKA1Q96BD8 OR1M4P-201ENST00000589199 287 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.28□□□□□ -1.88
SKA1Q96BD8 AC073544.2-201ENST00000601155 540 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 NRBF2P5-201ENST00000603087 788 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 AL161734.1-201ENST00000609720 557 ntBASIC3.28□□□□□ -1.88
SKA1Q96BD8 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
SKA1Q96BD8 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.28□□□□□ -1.88
SKA1Q96BD8 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SKA1Q96BD8 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.28□□□□□ -1.89
SKA1Q96BD8 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.27□□□□□ -1.89
SKA1Q96BD8 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
SKA1Q96BD8 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.27□□□□□ -1.89
SKA1Q96BD8 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SKA1Q96BD8 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SKA1Q96BD8 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
SKA1Q96BD8 SNORA4.3-201ENST00000365564 137 ntBASIC3.27□□□□□ -1.89
SKA1Q96BD8 RNU6-1083P-201ENST00000384022 107 ntBASIC3.27□□□□□ -1.89
SKA1Q96BD8 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
SKA1Q96BD8 AL357075.1-201ENST00000404107 726 ntBASIC3.27□□□□□ -1.89
SKA1Q96BD8 AL513475.1-201ENST00000406602 315 ntBASIC3.27□□□□□ -1.89
SKA1Q96BD8 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.27□□□□□ -1.89
SKA1Q96BD8 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.27□□□□□ -1.89
SKA1Q96BD8 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3.27□□□□□ -1.89
SKA1Q96BD8 RPL7P10-201ENST00000417407 739 ntBASIC3.27□□□□□ -1.89
SKA1Q96BD8 COTL1P1-201ENST00000422309 375 ntBASIC3.27□□□□□ -1.89
SKA1Q96BD8 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.27□□□□□ -1.89
SKA1Q96BD8 AL161651.1-201ENST00000440882 223 ntBASIC3.27□□□□□ -1.89
SKA1Q96BD8 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.27□□□□□ -1.89
SKA1Q96BD8 Z99127.3-201ENST00000448158 395 ntBASIC3.27□□□□□ -1.89
SKA1Q96BD8 RPS27AP8-201ENST00000452665 445 ntBASIC3.27□□□□□ -1.89
SKA1Q96BD8 S100A11P2-201ENST00000467589 312 ntBASIC3.27□□□□□ -1.89
SKA1Q96BD8 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.27□□□□□ -1.89
SKA1Q96BD8 AC108078.2-201ENST00000510750 236 ntBASIC3.27□□□□□ -1.89
SKA1Q96BD8 RNA5SP341-201ENST00000516261 117 ntBASIC3.27□□□□□ -1.89
SKA1Q96BD8 RNU6-572P-201ENST00000516724 80 ntBASIC3.27□□□□□ -1.89
SKA1Q96BD8 SNORA31.18-201ENST00000517043 134 ntBASIC3.27□□□□□ -1.89
SKA1Q96BD8 AC025755.1-201ENST00000521306 278 ntBASIC3.27□□□□□ -1.89
SKA1Q96BD8 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.27□□□□□ -1.89
SKA1Q96BD8 AC005476.1-201ENST00000554427 397 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms