Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 AC097473.1-201ENST00000508142 408 ntBASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 SNORA25.10-201ENST00000515926 124 ntBASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 RNU4ATAC7P-201ENST00000516280 125 ntBASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 AL121576.1-201ENST00000556055 276 ntBASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 AC008521.1-201ENST00000587471 187 ntBASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 AC005014.2-201ENST00000607795 599 ntBASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 AC090425.1-201ENST00000610007 140 ntBASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 AC131238.1-201ENST00000617135 328 ntBASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 AC010378.1-201ENST00000619270 362 ntBASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 ZNF519P1-201ENST00000449011 1626 ntBASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 IPO8P1-201ENST00000455509 3109 ntBASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
USHBP1Q8N6Y0 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 SNORA48.2-201ENST00000390926 124 ntBASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 RNA5SP219-201ENST00000390940 113 ntBASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 AC017079.2-201ENST00000416102 485 ntBASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 MCFD2P1-201ENST00000417812 300 ntBASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 AC093106.2-201ENST00000428212 385 ntBASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 snoU109.4-201ENST00000458953 143 ntBASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 RN7SL601P-201ENST00000471221 293 ntBASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 RN7SL432P-201ENST00000484057 298 ntBASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 AC026784.1-201ENST00000507986 352 ntBASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 RBBP4P6-201ENST00000508098 202 ntBASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 MEPE-206ENST00000511670 550 ntTSL 4 BASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 LEF1-218ENST00000512172 598 ntTSL 2 BASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 RNU6-764P-201ENST00000516396 105 ntBASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 PTP4A1P6-201ENST00000531034 478 ntBASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 AC023442.1-201ENST00000531247 422 ntBASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 MIR3941-201ENST00000582572 103 ntBASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 AL670379.6-201ENST00000603753 252 ntBASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 AC008162.1-201ENST00000604718 254 ntBASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 AL670379.1-201ENST00000604752 252 ntBASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 AL670379.5-201ENST00000605253 252 ntBASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 AL670379.8-201ENST00000605353 252 ntBASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 AL670379.7-201ENST00000605823 252 ntBASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 AL669831.3-213ENST00000636676 183 ntBASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 AC007656.2-201ENST00000624902 4547 ntBASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
USHBP1Q8N6Y0 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 RNU1-108P-201ENST00000362556 161 ntBASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 RNU6-1318P-201ENST00000365389 103 ntBASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 SNORA75B-201ENST00000384053 137 ntBASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 SNORD17-201ENST00000390930 237 ntBASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 MIR1302-3-201ENST00000408128 138 ntBASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 MIR548F4-201ENST00000408515 105 ntBASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 RNA5SP120-201ENST00000410900 112 ntBASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 RPL21P24-201ENST00000413752 448 ntBASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 AC087650.1-201ENST00000431445 468 ntBASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 RPL21P112-201ENST00000434403 463 ntBASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 RPL7P28-201ENST00000437739 740 ntBASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 IFNWP4-201ENST00000453148 294 ntBASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 RNU6-685P-201ENST00000517088 95 ntBASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 IGKV2D-36-201ENST00000518643 226 ntBASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 AC010653.1-201ENST00000571108 881 ntBASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 AL355598.1-201ENST00000604169 202 ntBASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 AC010680.4-201ENST00000605334 543 ntBASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 AC006329.2-201ENST00000611491 394 ntBASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 ATP5A1P2-202ENST00000616464 443 ntBASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 PISRT1.1-201ENST00000616930 107 ntBASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 U4.1-201ENST00000620349 87 ntBASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
USHBP1Q8N6Y0 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.76□□□□□ -1.65
USHBP1Q8N6Y0 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
USHBP1Q8N6Y0 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
USHBP1Q8N6Y0 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
USHBP1Q8N6Y0 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
USHBP1Q8N6Y0 RNU6-1115P-201ENST00000362490 106 ntBASIC4.76□□□□□ -1.65
USHBP1Q8N6Y0 RNU6-562P-201ENST00000362731 107 ntBASIC4.76□□□□□ -1.65
USHBP1Q8N6Y0 SNORD3E-201ENST00000362899 217 ntBASIC4.76□□□□□ -1.65
USHBP1Q8N6Y0 Y_RNA.149-201ENST00000363558 117 ntBASIC4.76□□□□□ -1.65
USHBP1Q8N6Y0 Y_RNA.193-201ENST00000363979 102 ntBASIC4.76□□□□□ -1.65
USHBP1Q8N6Y0 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
USHBP1Q8N6Y0 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms